Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 FADS2-212ENST00000522639 360 ntTSL 5 BASIC19.9■□□□□ 0.78
HOXC9P31274 AP001547.1-201ENST00000527440 374 ntTSL 3 BASIC19.9■□□□□ 0.78
HOXC9P31274 C14orf132-204ENST00000556728 774 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
HOXC9P31274 COMMD4-211ENST00000564815 639 ntTSL 3 BASIC19.9■□□□□ 0.78
HOXC9P31274 FADS2-215ENST00000574708 385 ntTSL 3 BASIC19.9■□□□□ 0.78
HOXC9P31274 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
HOXC9P31274 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
HOXC9P31274 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
HOXC9P31274 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC19.9■□□□□ 0.78
HOXC9P31274 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
HOXC9P31274 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
HOXC9P31274 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
HOXC9P31274 EVA1A-202ENST00000393913 1802 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
HOXC9P31274 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC19.9■□□□□ 0.78
HOXC9P31274 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC19.9■□□□□ 0.78
HOXC9P31274 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC19.9■□□□□ 0.78
HOXC9P31274 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.78
HOXC9P31274 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
HOXC9P31274 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC19.89■□□□□ 0.77
HOXC9P31274 OR1J1-201ENST00000259357 969 ntAPPRIS P1 BASIC19.89■□□□□ 0.77
HOXC9P31274 MSR1-201ENST00000262101 2132 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
HOXC9P31274 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
HOXC9P31274 FOXO4-201ENST00000341558 1353 ntTSL 5 BASIC19.89■□□□□ 0.77
HOXC9P31274 FXYD5-201ENST00000342879 1580 ntAPPRIS P2 TSL 1 (best) BASIC19.89■□□□□ 0.77
HOXC9P31274 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
HOXC9P31274 EDF1-202ENST00000371648 809 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
HOXC9P31274 AWAT1-201ENST00000374521 1365 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
HOXC9P31274 NCR3-204ENST00000376073 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
HOXC9P31274 ID2-203ENST00000396290 1362 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
HOXC9P31274 SALL4P5-201ENST00000419001 1760 ntBASIC19.89■□□□□ 0.77
HOXC9P31274 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC19.89■□□□□ 0.77
HOXC9P31274 AC009403.1-204ENST00000469539 597 ntTSL 2 BASIC19.89■□□□□ 0.77
HOXC9P31274 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC19.89■□□□□ 0.77
HOXC9P31274 GCOM2-201ENST00000509133 1104 ntBASIC19.89■□□□□ 0.77
HOXC9P31274 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC19.89■□□□□ 0.77
HOXC9P31274 CFL1-214ENST00000534769 758 ntTSL 2 BASIC19.89■□□□□ 0.77
HOXC9P31274 AC131206.1-201ENST00000538078 1211 ntBASIC19.89■□□□□ 0.77
HOXC9P31274 TMEM106A-202ENST00000541594 1330 ntTSL 2 BASIC19.89■□□□□ 0.77
HOXC9P31274 CCDC86-203ENST00000545580 697 ntAPPRIS ALT2 TSL 3 BASIC19.89■□□□□ 0.77
HOXC9P31274 SLIRP-210ENST00000557431 725 ntTSL 2 BASIC19.89■□□□□ 0.77
HOXC9P31274 AC242376.1-201ENST00000559033 726 ntBASIC19.89■□□□□ 0.77
HOXC9P31274 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.77
HOXC9P31274 GOLGA8S-201ENST00000562295 1878 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
HOXC9P31274 GFER-204ENST00000567719 483 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
HOXC9P31274 AC126365.1-201ENST00000578585 1514 ntBASIC19.89■□□□□ 0.77
HOXC9P31274 AL645941.3-201ENST00000580587 577 ntTSL 4 BASIC19.89■□□□□ 0.77
HOXC9P31274 AC005901.1-201ENST00000592766 552 ntTSL 4 BASIC19.89■□□□□ 0.77
HOXC9P31274 ZFP36-203ENST00000597629 1786 ntAPPRIS P2 TSL 1 (best) BASIC19.89■□□□□ 0.77
HOXC9P31274 NEAT1-203ENST00000601801 487 ntTSL 4 BASIC19.89■□□□□ 0.77
HOXC9P31274 NDUFB5-216ENST00000611971 951 ntTSL 2 BASIC19.89■□□□□ 0.77
HOXC9P31274 NPIPB11-202ENST00000614927 1216 ntTSL 5 BASIC19.89■□□□□ 0.77
HOXC9P31274 AC136621.1-201ENST00000624017 2304 ntBASIC19.89■□□□□ 0.77
HOXC9P31274 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
HOXC9P31274 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
HOXC9P31274 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC19.89■□□□□ 0.77
HOXC9P31274 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
HOXC9P31274 GSN-206ENST00000394353 2311 ntTSL 2 BASIC19.88■□□□□ 0.77
HOXC9P31274 ZC3H14-204ENST00000336693 2007 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
HOXC9P31274 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
HOXC9P31274 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC19.88■□□□□ 0.77
HOXC9P31274 PSMD13-203ENST00000431206 1591 ntTSL 2 BASIC19.88■□□□□ 0.77
HOXC9P31274 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
HOXC9P31274 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC19.88■□□□□ 0.77
HOXC9P31274 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
HOXC9P31274 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
HOXC9P31274 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
HOXC9P31274 RHOXF1-201ENST00000217999 769 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
HOXC9P31274 TMEM14B-202ENST00000379542 975 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
HOXC9P31274 AL590617.2-201ENST00000432673 917 ntTSL 3 BASIC19.88■□□□□ 0.77
HOXC9P31274 AL157407.1-201ENST00000435784 904 ntBASIC19.88■□□□□ 0.77
HOXC9P31274 SKA2-202ENST00000437036 625 ntTSL 2 BASIC19.88■□□□□ 0.77
HOXC9P31274 AP000356.1-201ENST00000438893 364 ntTSL 3 BASIC19.88■□□□□ 0.77
HOXC9P31274 LINC00642-202ENST00000442515 670 ntTSL 3 BASIC19.88■□□□□ 0.77
HOXC9P31274 WSPAR-201ENST00000513561 683 ntTSL 3 BASIC19.88■□□□□ 0.77
HOXC9P31274 EEF1D-218ENST00000526838 926 ntAPPRIS ALT2 TSL 2 BASIC19.88■□□□□ 0.77
HOXC9P31274 RTN3P1-201ENST00000536295 711 ntBASIC19.88■□□□□ 0.77
HOXC9P31274 C12orf73-211ENST00000553183 660 ntAPPRIS P1 TSL 3 BASIC19.88■□□□□ 0.77
HOXC9P31274 AL132639.2-202ENST00000553520 467 ntTSL 2 BASIC19.88■□□□□ 0.77
HOXC9P31274 AC009065.3-201ENST00000562027 627 ntTSL 5 BASIC19.88■□□□□ 0.77
HOXC9P31274 MIR4754-201ENST00000582477 89 ntBASIC19.88■□□□□ 0.77
HOXC9P31274 MIR5572-201ENST00000583188 137 ntBASIC19.88■□□□□ 0.77
HOXC9P31274 AC018635.2-201ENST00000608625 364 ntBASIC19.88■□□□□ 0.77
HOXC9P31274 NAP1L6-202ENST00000641404 1222 ntBASIC19.88■□□□□ 0.77
HOXC9P31274 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
HOXC9P31274 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
HOXC9P31274 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
HOXC9P31274 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
HOXC9P31274 MSTO1-202ENST00000368341 2245 ntTSL 2 BASIC19.88■□□□□ 0.77
HOXC9P31274 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
HOXC9P31274 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
HOXC9P31274 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
HOXC9P31274 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC19.88■□□□□ 0.77
HOXC9P31274 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
HOXC9P31274 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
HOXC9P31274 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
HOXC9P31274 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC19.88■□□□□ 0.77
HOXC9P31274 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
HOXC9P31274 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
HOXC9P31274 HORMAD1-201ENST00000322343 1771 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
HOXC9P31274 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC19.87■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 39.6 ms