Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC11.83□□□□□ -0.52
HOXD3P31249 IFNL2-201ENST00000331982 737 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
HOXD3P31249 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC11.83□□□□□ -0.52
HOXD3P31249 GZMB-202ENST00000382540 816 ntTSL 5 BASIC11.83□□□□□ -0.52
HOXD3P31249 NUDT1-206ENST00000397049 714 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
HOXD3P31249 P3H2-AS1-201ENST00000412203 730 ntTSL 5 BASIC11.83□□□□□ -0.52
HOXD3P31249 AC016694.1-201ENST00000434179 700 ntBASIC11.83□□□□□ -0.52
HOXD3P31249 YBX1P6-201ENST00000442962 1002 ntBASIC11.83□□□□□ -0.52
HOXD3P31249 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC11.83□□□□□ -0.52
HOXD3P31249 AC004066.1-201ENST00000502488 802 ntBASIC11.83□□□□□ -0.52
HOXD3P31249 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC11.83□□□□□ -0.52
HOXD3P31249 RNA5SP412-201ENST00000516234 123 ntBASIC11.83□□□□□ -0.52
HOXD3P31249 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC11.83□□□□□ -0.52
HOXD3P31249 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC11.83□□□□□ -0.52
HOXD3P31249 AGER-214ENST00000538695 487 ntTSL 2 BASIC11.83□□□□□ -0.52
HOXD3P31249 C12orf57-206ENST00000544681 980 ntTSL 2 BASIC11.83□□□□□ -0.52
HOXD3P31249 AP001453.3-201ENST00000545800 853 ntTSL 3 BASIC11.83□□□□□ -0.52
HOXD3P31249 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC11.83□□□□□ -0.52
HOXD3P31249 IFI27L1-210ENST00000556381 804 ntTSL 5 BASIC11.83□□□□□ -0.52
HOXD3P31249 AL118558.1-202ENST00000557242 451 ntTSL 3 BASIC11.83□□□□□ -0.52
HOXD3P31249 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC11.83□□□□□ -0.52
HOXD3P31249 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC11.83□□□□□ -0.52
HOXD3P31249 AP001063.1-201ENST00000568332 529 ntBASIC11.83□□□□□ -0.52
HOXD3P31249 FBXL12-211ENST00000591009 1005 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
HOXD3P31249 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC11.83□□□□□ -0.52
HOXD3P31249 AL354740.1-203ENST00000593917 424 ntTSL 3 BASIC11.83□□□□□ -0.52
HOXD3P31249 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC11.83□□□□□ -0.52
HOXD3P31249 AGER-215ENST00000620802 737 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
HOXD3P31249 BX539320.1-201ENST00000623759 877 ntBASIC11.83□□□□□ -0.52
HOXD3P31249 AC005252.2-201ENST00000624630 1141 ntBASIC11.83□□□□□ -0.52
HOXD3P31249 AC099795.1-202ENST00000640492 759 ntTSL 5 BASIC11.83□□□□□ -0.52
HOXD3P31249 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
HOXD3P31249 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC11.83□□□□□ -0.52
HOXD3P31249 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC11.83□□□□□ -0.52
HOXD3P31249 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC11.83□□□□□ -0.52
HOXD3P31249 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC11.83□□□□□ -0.52
HOXD3P31249 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC11.83□□□□□ -0.52
HOXD3P31249 KLHL26-201ENST00000300976 4407 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
HOXD3P31249 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
HOXD3P31249 BID-213ENST00000615414 2236 ntTSL 5 BASIC11.83□□□□□ -0.52
HOXD3P31249 SLC4A3-202ENST00000317151 4069 ntAPPRIS P1 TSL 5 BASIC11.83□□□□□ -0.52
HOXD3P31249 OR2C3-201ENST00000366487 8467 ntAPPRIS P1 BASIC11.83□□□□□ -0.52
HOXD3P31249 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
HOXD3P31249 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
HOXD3P31249 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC11.83□□□□□ -0.52
HOXD3P31249 GTF2IRD1-205ENST00000476977 5868 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
HOXD3P31249 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC11.83□□□□□ -0.52
HOXD3P31249 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC11.83□□□□□ -0.52
HOXD3P31249 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC11.83□□□□□ -0.52
HOXD3P31249 ACP2-205ENST00000527256 1499 ntTSL 2 BASIC11.83□□□□□ -0.52
HOXD3P31249 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
HOXD3P31249 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
HOXD3P31249 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC11.82□□□□□ -0.52
HOXD3P31249 COG3-201ENST00000349995 4498 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
HOXD3P31249 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
HOXD3P31249 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC11.82□□□□□ -0.52
HOXD3P31249 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC11.82□□□□□ -0.52
HOXD3P31249 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC11.82□□□□□ -0.52
HOXD3P31249 PRG2-202ENST00000525955 1367 ntAPPRIS P3 TSL 2 BASIC11.82□□□□□ -0.52
HOXD3P31249 AC020907.1-201ENST00000616460 1350 ntBASIC11.82□□□□□ -0.52
HOXD3P31249 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
HOXD3P31249 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
HOXD3P31249 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC11.82□□□□□ -0.52
HOXD3P31249 PTPN5-204ENST00000396170 3871 ntTSL 2 BASIC11.82□□□□□ -0.52
HOXD3P31249 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC11.82□□□□□ -0.52
HOXD3P31249 HIPK3-203ENST00000456517 7399 ntAPPRIS P1 TSL 2 BASIC11.82□□□□□ -0.52
HOXD3P31249 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
HOXD3P31249 TTC28-AS1-207ENST00000428584 5859 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
HOXD3P31249 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
HOXD3P31249 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC11.82□□□□□ -0.52
HOXD3P31249 OPA1-202ENST00000361510 6492 ntAPPRIS ALT2 TSL 5 BASIC11.82□□□□□ -0.52
HOXD3P31249 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC11.82□□□□□ -0.52
HOXD3P31249 POU5F1B-201ENST00000465342 5360 ntAPPRIS P1 TSL 3 BASIC11.82□□□□□ -0.52
HOXD3P31249 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
HOXD3P31249 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC11.82□□□□□ -0.52
HOXD3P31249 AC092933.1-201ENST00000393644 945 ntBASIC11.82□□□□□ -0.52
HOXD3P31249 AL365277.1-206ENST00000417869 487 ntTSL 3 BASIC11.82□□□□□ -0.52
HOXD3P31249 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC11.82□□□□□ -0.52
HOXD3P31249 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC11.82□□□□□ -0.52
HOXD3P31249 AL365277.1-204ENST00000450157 599 ntTSL 3 BASIC11.82□□□□□ -0.52
HOXD3P31249 AC093433.1-201ENST00000458048 571 ntBASIC11.82□□□□□ -0.52
HOXD3P31249 AL365277.1-203ENST00000458207 693 ntTSL 3 BASIC11.82□□□□□ -0.52
HOXD3P31249 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC11.82□□□□□ -0.52
HOXD3P31249 CD74-212ENST00000524315 584 ntTSL 5 BASIC11.82□□□□□ -0.52
HOXD3P31249 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC11.82□□□□□ -0.52
HOXD3P31249 AURKB-202ENST00000534871 1167 ntTSL 2 BASIC11.82□□□□□ -0.52
HOXD3P31249 RIT1-205ENST00000539040 919 ntTSL 2 BASIC11.82□□□□□ -0.52
HOXD3P31249 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
HOXD3P31249 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC11.82□□□□□ -0.52
HOXD3P31249 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC11.82□□□□□ -0.52
HOXD3P31249 TNNT1-209ENST00000587758 1016 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
HOXD3P31249 ATF5-205ENST00000600336 682 ntTSL 2 BASIC11.82□□□□□ -0.52
HOXD3P31249 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC11.82□□□□□ -0.52
HOXD3P31249 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC11.82□□□□□ -0.52
HOXD3P31249 AC068587.10-201ENST00000641210 219 ntBASIC11.82□□□□□ -0.52
HOXD3P31249 AL645728.2-202ENST00000641679 227 ntBASIC11.82□□□□□ -0.52
HOXD3P31249 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
HOXD3P31249 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
HOXD3P31249 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC11.82□□□□□ -0.52
HOXD3P31249 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Retrieved 100 of 98,524 protein–RNA pairs in 138.1 ms