Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 CUL3-202ENST00000344951 6592 ntTSL 2 BASIC13.31□□□□□ -0.28
COL8A1P27658 BNIP2-201ENST00000267859 6325 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
COL8A1P27658 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
COL8A1P27658 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC13.31□□□□□ -0.28
COL8A1P27658 SPERT-204ENST00000610924 1505 ntAPPRIS ALT2 TSL 5 BASIC13.31□□□□□ -0.28
COL8A1P27658 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
COL8A1P27658 HBB-201ENST00000335295 628 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
COL8A1P27658 MUC1-203ENST00000342482 537 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
COL8A1P27658 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC13.31□□□□□ -0.28
COL8A1P27658 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC13.31□□□□□ -0.28
COL8A1P27658 MCFD2-204ENST00000409207 1113 ntAPPRIS P1 TSL 2 BASIC13.31□□□□□ -0.28
COL8A1P27658 RPS9P1-201ENST00000419943 583 ntBASIC13.31□□□□□ -0.28
COL8A1P27658 ISCA2P1-201ENST00000425548 448 ntBASIC13.31□□□□□ -0.28
COL8A1P27658 AL020996.1-201ENST00000442055 435 ntTSL 2 BASIC13.31□□□□□ -0.28
COL8A1P27658 AC073150.1-201ENST00000450406 1084 ntBASIC13.31□□□□□ -0.28
COL8A1P27658 KLK11-204ENST00000453757 1174 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
COL8A1P27658 RPL18P13-201ENST00000478088 569 ntBASIC13.31□□□□□ -0.28
COL8A1P27658 AP003171.2-201ENST00000528208 925 ntBASIC13.31□□□□□ -0.28
COL8A1P27658 FAM86B1-218ENST00000534520 808 ntTSL 2 BASIC13.31□□□□□ -0.28
COL8A1P27658 RDH5-204ENST00000548082 1259 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
COL8A1P27658 AC242376.1-201ENST00000559033 726 ntBASIC13.31□□□□□ -0.28
COL8A1P27658 SYT17-208ENST00000568433 812 ntTSL 3 BASIC13.31□□□□□ -0.28
COL8A1P27658 AC024361.2-201ENST00000574471 898 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
COL8A1P27658 AC111170.1-201ENST00000591110 1132 ntTSL 3 BASIC13.31□□□□□ -0.28
COL8A1P27658 IRF3-225ENST00000600022 882 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
COL8A1P27658 AP003392.6-201ENST00000607709 325 ntBASIC13.31□□□□□ -0.28
COL8A1P27658 ZACNP1-201ENST00000612259 710 ntBASIC13.31□□□□□ -0.28
COL8A1P27658 AP001527.2-201ENST00000614441 631 ntBASIC13.31□□□□□ -0.28
COL8A1P27658 IFI27-215ENST00000621160 644 ntAPPRIS P2 TSL 1 (best) BASIC13.31□□□□□ -0.28
COL8A1P27658 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC13.31□□□□□ -0.28
COL8A1P27658 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
COL8A1P27658 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
COL8A1P27658 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
COL8A1P27658 IQCE-203ENST00000402050 6844 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
COL8A1P27658 HTR4-209ENST00000521530 1323 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
COL8A1P27658 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC13.31□□□□□ -0.28
COL8A1P27658 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
COL8A1P27658 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
COL8A1P27658 PPIL3-201ENST00000286175 1370 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
COL8A1P27658 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
COL8A1P27658 ZNF333-209ENST00000601134 1392 ntTSL 5 BASIC13.31□□□□□ -0.28
COL8A1P27658 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
COL8A1P27658 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
COL8A1P27658 RASA4-201ENST00000262940 5605 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
COL8A1P27658 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
COL8A1P27658 TTC28-AS1-219ENST00000454741 5064 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
COL8A1P27658 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
COL8A1P27658 CAP2-206ENST00000489374 1430 ntTSL 2 BASIC13.3□□□□□ -0.28
COL8A1P27658 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
COL8A1P27658 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC13.3□□□□□ -0.28
COL8A1P27658 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC13.3□□□□□ -0.28
COL8A1P27658 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC13.3□□□□□ -0.28
COL8A1P27658 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
COL8A1P27658 AC021683.3-202ENST00000592572 4440 ntTSL 5 BASIC13.3□□□□□ -0.28
COL8A1P27658 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
COL8A1P27658 EPHX1-202ENST00000366837 1780 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
COL8A1P27658 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
COL8A1P27658 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
COL8A1P27658 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
COL8A1P27658 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
COL8A1P27658 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
COL8A1P27658 PTGFRN-201ENST00000393203 6178 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
COL8A1P27658 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
COL8A1P27658 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
COL8A1P27658 UBR5-212ENST00000521922 9008 ntAPPRIS ALT1 TSL 5 BASIC13.3□□□□□ -0.28
COL8A1P27658 PLAG1-203ENST00000429357 1899 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
COL8A1P27658 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC13.3□□□□□ -0.28
COL8A1P27658 FRMD3-202ENST00000328788 964 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
COL8A1P27658 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC13.3□□□□□ -0.28
COL8A1P27658 TMEM242-201ENST00000367144 1030 ntTSL 2 BASIC13.3□□□□□ -0.28
COL8A1P27658 FAM27C-201ENST00000377542 616 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
COL8A1P27658 AP000356.3-201ENST00000382243 753 ntBASIC13.3□□□□□ -0.28
COL8A1P27658 HNRNPA1P41-201ENST00000397777 928 ntBASIC13.3□□□□□ -0.28
COL8A1P27658 AC012362.1-201ENST00000434906 739 ntBASIC13.3□□□□□ -0.28
COL8A1P27658 MRAS-205ENST00000474559 856 ntAPPRIS P1 TSL 3 BASIC13.3□□□□□ -0.28
COL8A1P27658 LILRA5-204ENST00000486742 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
COL8A1P27658 AC133961.1-201ENST00000503085 762 ntTSL 3 BASIC13.3□□□□□ -0.28
COL8A1P27658 FXYD2-205ENST00000528014 672 ntAPPRIS P1 TSL 3 BASIC13.3□□□□□ -0.28
COL8A1P27658 ADIG-204ENST00000537425 770 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
COL8A1P27658 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC13.3□□□□□ -0.28
COL8A1P27658 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC13.3□□□□□ -0.28
COL8A1P27658 FAM227B-210ENST00000560246 911 ntAPPRIS ALT2 TSL 3 BASIC13.3□□□□□ -0.28
COL8A1P27658 AC126696.1-201ENST00000561567 756 ntTSL 3 BASIC13.3□□□□□ -0.28
COL8A1P27658 AC079336.4-201ENST00000584219 408 ntTSL 2 BASIC13.3□□□□□ -0.28
COL8A1P27658 AC018761.2-201ENST00000585496 296 ntTSL 3 BASIC13.3□□□□□ -0.28
COL8A1P27658 TOMM7-207ENST00000621567 241 ntAPPRIS ALT1 TSL 5 BASIC13.3□□□□□ -0.28
COL8A1P27658 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC13.3□□□□□ -0.28
COL8A1P27658 C18orf25-206ENST00000619301 5264 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
COL8A1P27658 SHROOM4-201ENST00000289292 6261 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
COL8A1P27658 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC13.3□□□□□ -0.28
COL8A1P27658 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
COL8A1P27658 AC079328.2-201ENST00000561241 3354 ntBASIC13.3□□□□□ -0.28
COL8A1P27658 SLC26A10-201ENST00000320442 2389 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
COL8A1P27658 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
COL8A1P27658 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
COL8A1P27658 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
COL8A1P27658 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
COL8A1P27658 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
COL8A1P27658 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC13.3□□□□□ -0.28
COL8A1P27658 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 56.4 ms