Protein–RNA interactions for Protein: P0DP91

CSB-PGBD3, Chimeric ERCC6-PGBD3 protein, humanhuman

Predictions only

Length 1,061 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSB-PGBD3P0DP91 NDUFC2-KCTD14-202ENST00000530054 656 ntAPPRIS P3 TSL 2 BASIC20.02■□□□□ 0.8
CSB-PGBD3P0DP91 AP000894.2-204ENST00000577358 473 ntTSL 5 BASIC20.02■□□□□ 0.8
CSB-PGBD3P0DP91 SMIM22-209ENST00000591870 355 ntAPPRIS ALT2 TSL 2 BASIC20.02■□□□□ 0.8
CSB-PGBD3P0DP91 IRF3-215ENST00000596822 823 ntTSL 3 BASIC20.02■□□□□ 0.8
CSB-PGBD3P0DP91 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CSB-PGBD3P0DP91 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CSB-PGBD3P0DP91 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CSB-PGBD3P0DP91 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
CSB-PGBD3P0DP91 AC024909.3-201ENST00000611513 2257 ntBASIC20.02■□□□□ 0.8
CSB-PGBD3P0DP91 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
CSB-PGBD3P0DP91 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
CSB-PGBD3P0DP91 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.8
CSB-PGBD3P0DP91 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
CSB-PGBD3P0DP91 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.79
CSB-PGBD3P0DP91 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
CSB-PGBD3P0DP91 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.79
CSB-PGBD3P0DP91 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC20.02■□□□□ 0.79
CSB-PGBD3P0DP91 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
CSB-PGBD3P0DP91 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC20.02■□□□□ 0.79
CSB-PGBD3P0DP91 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
CSB-PGBD3P0DP91 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.79
CSB-PGBD3P0DP91 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.79
CSB-PGBD3P0DP91 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC20.02■□□□□ 0.79
CSB-PGBD3P0DP91 DLX4-202ENST00000411890 1404 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
CSB-PGBD3P0DP91 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
CSB-PGBD3P0DP91 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.79
CSB-PGBD3P0DP91 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CSB-PGBD3P0DP91 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
CSB-PGBD3P0DP91 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CSB-PGBD3P0DP91 AC010491.1-201ENST00000563101 2797 ntBASIC20.01■□□□□ 0.79
CSB-PGBD3P0DP91 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CSB-PGBD3P0DP91 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC20.01■□□□□ 0.79
CSB-PGBD3P0DP91 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CSB-PGBD3P0DP91 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
CSB-PGBD3P0DP91 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CSB-PGBD3P0DP91 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
CSB-PGBD3P0DP91 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
CSB-PGBD3P0DP91 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC20.01■□□□□ 0.79
CSB-PGBD3P0DP91 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC20.01■□□□□ 0.79
CSB-PGBD3P0DP91 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC20.01■□□□□ 0.79
CSB-PGBD3P0DP91 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC20.01■□□□□ 0.79
CSB-PGBD3P0DP91 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC20.01■□□□□ 0.79
CSB-PGBD3P0DP91 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
CSB-PGBD3P0DP91 LTB4R2-202ENST00000528054 3092 ntBASIC20.01■□□□□ 0.79
CSB-PGBD3P0DP91 CELA3B-201ENST00000337107 897 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CSB-PGBD3P0DP91 TSPO2-201ENST00000373158 718 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CSB-PGBD3P0DP91 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
CSB-PGBD3P0DP91 HILPDA-202ENST00000435296 785 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
CSB-PGBD3P0DP91 AL139246.4-201ENST00000442305 514 ntTSL 3 BASIC20.01■□□□□ 0.79
CSB-PGBD3P0DP91 AC073150.1-201ENST00000450406 1084 ntBASIC20.01■□□□□ 0.79
CSB-PGBD3P0DP91 NOC2LP1-201ENST00000450578 752 ntBASIC20.01■□□□□ 0.79
CSB-PGBD3P0DP91 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CSB-PGBD3P0DP91 AC242376.1-201ENST00000559033 726 ntBASIC20.01■□□□□ 0.79
CSB-PGBD3P0DP91 AC127024.2-201ENST00000581019 789 ntTSL 5 BASIC20.01■□□□□ 0.79
CSB-PGBD3P0DP91 CLEC11A-202ENST00000599973 1026 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CSB-PGBD3P0DP91 TLDC2-203ENST00000602922 1179 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CSB-PGBD3P0DP91 AL132994.2-201ENST00000603120 687 ntBASIC20.01■□□□□ 0.79
CSB-PGBD3P0DP91 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CSB-PGBD3P0DP91 ALG12-201ENST00000330817 5350 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CSB-PGBD3P0DP91 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CSB-PGBD3P0DP91 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC20.01■□□□□ 0.79
CSB-PGBD3P0DP91 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CSB-PGBD3P0DP91 SPERT-204ENST00000610924 1505 ntAPPRIS ALT2 TSL 5 BASIC20.01■□□□□ 0.79
CSB-PGBD3P0DP91 BNIP1-201ENST00000231668 1339 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CSB-PGBD3P0DP91 HIGD1A-202ENST00000418900 1322 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
CSB-PGBD3P0DP91 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
CSB-PGBD3P0DP91 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC20■□□□□ 0.79
CSB-PGBD3P0DP91 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CSB-PGBD3P0DP91 ADAMTS18-201ENST00000282849 5913 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CSB-PGBD3P0DP91 AL603832.2-201ENST00000566195 2125 ntBASIC20■□□□□ 0.79
CSB-PGBD3P0DP91 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CSB-PGBD3P0DP91 PRAL-201ENST00000624952 3286 ntBASIC20■□□□□ 0.79
CSB-PGBD3P0DP91 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC20■□□□□ 0.79
CSB-PGBD3P0DP91 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC20■□□□□ 0.79
CSB-PGBD3P0DP91 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC20■□□□□ 0.79
CSB-PGBD3P0DP91 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC20■□□□□ 0.79
CSB-PGBD3P0DP91 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CSB-PGBD3P0DP91 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CSB-PGBD3P0DP91 LINC02405-201ENST00000512624 1361 ntTSL 1 (best) BASIC20■□□□□ 0.79
CSB-PGBD3P0DP91 SERPINE3-201ENST00000400389 1218 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CSB-PGBD3P0DP91 AC010141.1-201ENST00000411585 623 ntBASIC20■□□□□ 0.79
CSB-PGBD3P0DP91 LIMS1-206ENST00000414829 439 ntTSL 1 (best) BASIC20■□□□□ 0.79
CSB-PGBD3P0DP91 LINC01006-202ENST00000418309 640 ntTSL 3 BASIC20■□□□□ 0.79
CSB-PGBD3P0DP91 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC20■□□□□ 0.79
CSB-PGBD3P0DP91 FAM58BP-201ENST00000439056 645 ntBASIC20■□□□□ 0.79
CSB-PGBD3P0DP91 EFCAB10-201ENST00000460135 717 ntTSL 2 BASIC20■□□□□ 0.79
CSB-PGBD3P0DP91 LIMS3-205ENST00000487150 782 ntTSL 3 BASIC20■□□□□ 0.79
CSB-PGBD3P0DP91 TAPBP-241ENST00000489157 1299 ntTSL 1 (best) BASIC20■□□□□ 0.79
CSB-PGBD3P0DP91 SIRT3-210ENST00000529382 1225 ntTSL 2 BASIC20■□□□□ 0.79
CSB-PGBD3P0DP91 LINC01475-201ENST00000548010 766 ntTSL 1 (best) BASIC20■□□□□ 0.79
CSB-PGBD3P0DP91 AC009065.3-201ENST00000562027 627 ntTSL 5 BASIC20■□□□□ 0.79
CSB-PGBD3P0DP91 AC138696.2-201ENST00000607376 223 ntBASIC20■□□□□ 0.79
CSB-PGBD3P0DP91 COX6A1P2-201ENST00000620597 330 ntBASIC20■□□□□ 0.79
CSB-PGBD3P0DP91 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC20■□□□□ 0.79
CSB-PGBD3P0DP91 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC20■□□□□ 0.79
CSB-PGBD3P0DP91 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CSB-PGBD3P0DP91 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC20■□□□□ 0.79
CSB-PGBD3P0DP91 PLAG1-203ENST00000429357 1899 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CSB-PGBD3P0DP91 CICP11-201ENST00000434745 2827 ntBASIC20■□□□□ 0.79
CSB-PGBD3P0DP91 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 81.3 ms