Protein–RNA interactions for Protein: O95628

CNOT4, CCR4-NOT transcription complex subunit 4, humanhuman

Known RBP Predictions only

Length 575 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT4O95628 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CNOT4O95628 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC13.62□□□□□ -0.23
CNOT4O95628 NUP210-201ENST00000254508 7193 ntAPPRIS P1 TSL 2 BASIC13.62□□□□□ -0.23
CNOT4O95628 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC13.62□□□□□ -0.23
CNOT4O95628 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC13.62□□□□□ -0.23
CNOT4O95628 FAM84B-201ENST00000304916 5404 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CNOT4O95628 AL122018.1-201ENST00000446607 2310 ntBASIC13.62□□□□□ -0.23
CNOT4O95628 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CNOT4O95628 AC126177.1-201ENST00000547829 2218 ntBASIC13.62□□□□□ -0.23
CNOT4O95628 KCNT1-211ENST00000491806 3678 ntAPPRIS ALT2 TSL 5 BASIC13.62□□□□□ -0.23
CNOT4O95628 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC13.62□□□□□ -0.23
CNOT4O95628 SETD1A-201ENST00000262519 6451 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CNOT4O95628 GAK-201ENST00000314167 4442 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CNOT4O95628 PLIN4-201ENST00000301286 6353 ntAPPRIS P2 TSL 5 BASIC13.62□□□□□ -0.23
CNOT4O95628 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
CNOT4O95628 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC13.62□□□□□ -0.23
CNOT4O95628 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC13.62□□□□□ -0.23
CNOT4O95628 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC13.62□□□□□ -0.23
CNOT4O95628 HIST1H2BPS3-201ENST00000419683 341 ntBASIC13.62□□□□□ -0.23
CNOT4O95628 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC13.62□□□□□ -0.23
CNOT4O95628 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC13.62□□□□□ -0.23
CNOT4O95628 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC13.62□□□□□ -0.23
CNOT4O95628 AC004066.1-201ENST00000502488 802 ntBASIC13.62□□□□□ -0.23
CNOT4O95628 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC13.62□□□□□ -0.23
CNOT4O95628 TPD52L1-214ENST00000534199 811 ntTSL 2 BASIC13.62□□□□□ -0.23
CNOT4O95628 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC13.62□□□□□ -0.23
CNOT4O95628 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC13.62□□□□□ -0.23
CNOT4O95628 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
CNOT4O95628 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CNOT4O95628 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC13.62□□□□□ -0.23
CNOT4O95628 INO80C-210ENST00000590757 595 ntTSL 2 BASIC13.62□□□□□ -0.23
CNOT4O95628 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC13.62□□□□□ -0.23
CNOT4O95628 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC13.62□□□□□ -0.23
CNOT4O95628 METTL26-214ENST00000614890 801 ntTSL 3 BASIC13.62□□□□□ -0.23
CNOT4O95628 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC13.62□□□□□ -0.23
CNOT4O95628 COX11-210ENST00000639671 696 ntBASIC13.62□□□□□ -0.23
CNOT4O95628 AL033527.4-201ENST00000641026 673 ntBASIC13.62□□□□□ -0.23
CNOT4O95628 FERMT1-201ENST00000217289 5151 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CNOT4O95628 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
CNOT4O95628 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC13.62□□□□□ -0.23
CNOT4O95628 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CNOT4O95628 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC13.62□□□□□ -0.23
CNOT4O95628 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CNOT4O95628 UMODL1-203ENST00000400424 5516 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
CNOT4O95628 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC13.62□□□□□ -0.23
CNOT4O95628 IFRD1-205ENST00000429071 1938 ntTSL 2 BASIC13.62□□□□□ -0.23
CNOT4O95628 GRB2-201ENST00000316615 3181 ntTSL 5 BASIC13.62□□□□□ -0.23
CNOT4O95628 ABR-205ENST00000544583 5595 ntTSL 2 BASIC13.62□□□□□ -0.23
CNOT4O95628 ZNF559-202ENST00000393883 5095 ntAPPRIS P3 TSL 2 BASIC13.62□□□□□ -0.23
CNOT4O95628 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
CNOT4O95628 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC13.62□□□□□ -0.23
CNOT4O95628 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC13.62□□□□□ -0.23
CNOT4O95628 CDK5RAP2-202ENST00000360190 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
CNOT4O95628 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CNOT4O95628 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC13.62□□□□□ -0.23
CNOT4O95628 ZNF618-207ENST00000615615 9289 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
CNOT4O95628 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
CNOT4O95628 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC13.62□□□□□ -0.23
CNOT4O95628 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
CNOT4O95628 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC13.62□□□□□ -0.23
CNOT4O95628 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
CNOT4O95628 LARGE1-201ENST00000354992 4409 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CNOT4O95628 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC13.61□□□□□ -0.23
CNOT4O95628 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC13.61□□□□□ -0.23
CNOT4O95628 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC13.61□□□□□ -0.23
CNOT4O95628 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CNOT4O95628 IMPA1-201ENST00000256108 2690 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CNOT4O95628 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC13.61□□□□□ -0.23
CNOT4O95628 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC13.61□□□□□ -0.23
CNOT4O95628 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CNOT4O95628 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CNOT4O95628 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC13.61□□□□□ -0.23
CNOT4O95628 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC13.61□□□□□ -0.23
CNOT4O95628 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
CNOT4O95628 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
CNOT4O95628 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CNOT4O95628 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
CNOT4O95628 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC13.61□□□□□ -0.23
CNOT4O95628 TNIK-204ENST00000436636 6970 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
CNOT4O95628 TMTC1-207ENST00000552618 3915 ntTSL 5 BASIC13.61□□□□□ -0.23
CNOT4O95628 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CNOT4O95628 KIAA0319-204ENST00000537886 6622 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
CNOT4O95628 LGALS2-201ENST00000215886 591 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CNOT4O95628 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CNOT4O95628 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CNOT4O95628 RPF1-202ENST00000370656 724 ntTSL 2 BASIC13.61□□□□□ -0.23
CNOT4O95628 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CNOT4O95628 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CNOT4O95628 PGGT1BP2-201ENST00000398621 1028 ntBASIC13.61□□□□□ -0.23
CNOT4O95628 FAM221A-203ENST00000409653 761 ntTSL 5 BASIC13.61□□□□□ -0.23
CNOT4O95628 FAM221A-204ENST00000409994 1136 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
CNOT4O95628 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC13.61□□□□□ -0.23
CNOT4O95628 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC13.61□□□□□ -0.23
CNOT4O95628 TMEM14DP-201ENST00000422205 345 ntBASIC13.61□□□□□ -0.23
CNOT4O95628 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
CNOT4O95628 AL356489.1-201ENST00000449144 1144 ntTSL 3 BASIC13.61□□□□□ -0.23
CNOT4O95628 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC13.61□□□□□ -0.23
CNOT4O95628 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
CNOT4O95628 IFT20-206ENST00000578122 834 ntTSL 2 BASIC13.61□□□□□ -0.23
CNOT4O95628 IFT20-208ENST00000578985 831 ntTSL 3 BASIC13.61□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms