Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC18.8■□□□□ 0.6
CACNA1FO60840 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC18.8■□□□□ 0.6
CACNA1FO60840 AP1S3-206ENST00000443700 1785 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CACNA1FO60840 HIST1H1B-201ENST00000331442 681 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
CACNA1FO60840 SNHG14-209ENST00000456576 544 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CACNA1FO60840 BNIP3P13-201ENST00000599968 566 ntBASIC18.8■□□□□ 0.6
CACNA1FO60840 AP000229.1-202ENST00000609365 559 ntTSL 4 BASIC18.8■□□□□ 0.6
CACNA1FO60840 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC18.8■□□□□ 0.6
CACNA1FO60840 AC011270.2-201ENST00000624293 2550 ntBASIC18.8■□□□□ 0.6
CACNA1FO60840 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC18.8■□□□□ 0.6
CACNA1FO60840 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CACNA1FO60840 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC18.8■□□□□ 0.6
CACNA1FO60840 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CACNA1FO60840 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CACNA1FO60840 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CACNA1FO60840 CCDC32-201ENST00000358005 1704 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
CACNA1FO60840 DIAPH2-202ENST00000355827 3782 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
CACNA1FO60840 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC18.8■□□□□ 0.6
CACNA1FO60840 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
CACNA1FO60840 ZBTB32-202ENST00000392197 2068 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
CACNA1FO60840 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC18.79■□□□□ 0.6
CACNA1FO60840 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CACNA1FO60840 KCNG4-202ENST00000568181 2199 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CACNA1FO60840 FCRLB-201ENST00000336830 1193 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CACNA1FO60840 RAB36-202ENST00000341989 936 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CACNA1FO60840 NKAIN1P1-201ENST00000435754 582 ntBASIC18.79■□□□□ 0.6
CACNA1FO60840 USE1-202ENST00000445667 795 ntAPPRIS ALT1 TSL 5 BASIC18.79■□□□□ 0.6
CACNA1FO60840 AC012507.1-201ENST00000454890 600 ntTSL 4 BASIC18.79■□□□□ 0.6
CACNA1FO60840 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
CACNA1FO60840 HNRNPA1P36-201ENST00000521313 955 ntBASIC18.79■□□□□ 0.6
CACNA1FO60840 CD63-208ENST00000549117 1233 ntAPPRIS P1 TSL 3 BASIC18.79■□□□□ 0.6
CACNA1FO60840 AC009779.1-201ENST00000551138 283 ntBASIC18.79■□□□□ 0.6
CACNA1FO60840 IFITM3-204ENST00000602735 713 ntAPPRIS ALT1 TSL 5 BASIC18.79■□□□□ 0.6
CACNA1FO60840 FDPS-221ENST00000612683 1198 ntAPPRIS ALT1 TSL 5 BASIC18.79■□□□□ 0.6
CACNA1FO60840 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
CACNA1FO60840 FAM45BP-202ENST00000592932 1624 ntBASIC18.79■□□□□ 0.6
CACNA1FO60840 HILPDA-201ENST00000257696 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CACNA1FO60840 PCMTD2-207ENST00000609372 1321 ntTSL 4 BASIC18.79■□□□□ 0.6
CACNA1FO60840 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC18.79■□□□□ 0.6
CACNA1FO60840 CDK16-211ENST00000518022 2022 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
CACNA1FO60840 BLMH-201ENST00000261714 2365 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CACNA1FO60840 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CACNA1FO60840 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CACNA1FO60840 PLSCR4-204ENST00000446574 1442 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
CACNA1FO60840 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC18.79■□□□□ 0.6
CACNA1FO60840 AC082651.4-201ENST00000483023 1852 ntTSL 5 BASIC18.79■□□□□ 0.6
CACNA1FO60840 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC18.79■□□□□ 0.6
CACNA1FO60840 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CACNA1FO60840 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CACNA1FO60840 MBD3L5-201ENST00000329753 778 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CACNA1FO60840 TREM2-203ENST00000373122 1012 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
CACNA1FO60840 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
CACNA1FO60840 AGER-203ENST00000375065 665 ntTSL 2 BASIC18.79■□□□□ 0.6
CACNA1FO60840 AC092944.1-202ENST00000487238 483 ntTSL 4 BASIC18.79■□□□□ 0.6
CACNA1FO60840 ATP6V1C1-202ENST00000518738 2130 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CACNA1FO60840 AC084859.1-201ENST00000533002 670 ntTSL 4 BASIC18.79■□□□□ 0.6
CACNA1FO60840 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC18.79■□□□□ 0.6
CACNA1FO60840 CRHR1-208ENST00000577353 1206 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CACNA1FO60840 AC090164.2-201ENST00000611487 516 ntBASIC18.79■□□□□ 0.6
CACNA1FO60840 AC138649.2-201ENST00000615886 705 ntBASIC18.79■□□□□ 0.6
CACNA1FO60840 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
CACNA1FO60840 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CACNA1FO60840 PLA1A-205ENST00000494440 1775 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CACNA1FO60840 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CACNA1FO60840 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CACNA1FO60840 E2F3P2-201ENST00000447755 1422 ntBASIC18.78■□□□□ 0.6
CACNA1FO60840 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CACNA1FO60840 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CACNA1FO60840 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC18.78■□□□□ 0.6
CACNA1FO60840 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC18.78■□□□□ 0.6
CACNA1FO60840 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC18.78■□□□□ 0.6
CACNA1FO60840 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
CACNA1FO60840 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC18.78■□□□□ 0.6
CACNA1FO60840 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
CACNA1FO60840 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
CACNA1FO60840 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CACNA1FO60840 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CACNA1FO60840 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CACNA1FO60840 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC18.78■□□□□ 0.6
CACNA1FO60840 VDAC1P1-201ENST00000439229 848 ntBASIC18.78■□□□□ 0.6
CACNA1FO60840 AC022447.6-201ENST00000515522 438 ntBASIC18.78■□□□□ 0.6
CACNA1FO60840 ORAOV1-211ENST00000542341 775 ntTSL 2 BASIC18.78■□□□□ 0.6
CACNA1FO60840 AL021546.1-201ENST00000551806 552 ntAPPRIS P1 TSL 3 BASIC18.78■□□□□ 0.6
CACNA1FO60840 C15orf40-211ENST00000565712 559 ntTSL 3 BASIC18.78■□□□□ 0.6
CACNA1FO60840 RN7SL219P-201ENST00000582872 296 ntBASIC18.78■□□□□ 0.6
CACNA1FO60840 ABHD16A-202ENST00000440843 1906 ntTSL 2 BASIC18.78■□□□□ 0.6
CACNA1FO60840 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CACNA1FO60840 UROD-201ENST00000246337 1300 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CACNA1FO60840 MFNG-202ENST00000416983 2034 ntTSL 2 BASIC18.78■□□□□ 0.6
CACNA1FO60840 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC18.78■□□□□ 0.6
CACNA1FO60840 AL136172.1-201ENST00000598590 1394 ntBASIC18.78■□□□□ 0.6
CACNA1FO60840 AC020907.1-201ENST00000616460 1350 ntBASIC18.78■□□□□ 0.6
CACNA1FO60840 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CACNA1FO60840 MEGF10-202ENST00000418761 2238 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CACNA1FO60840 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CACNA1FO60840 NIPAL3-202ENST00000339255 1676 ntTSL 5 BASIC18.78■□□□□ 0.6
CACNA1FO60840 PNMA1-201ENST00000316836 2590 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
CACNA1FO60840 CALCR-203ENST00000394441 1774 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
CACNA1FO60840 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CACNA1FO60840 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms