Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC15.79■□□□□ 0.12
PCDH9Q9HC56 MIR4745-201ENST00000577608 62 ntBASIC15.79■□□□□ 0.12
PCDH9Q9HC56 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
PCDH9Q9HC56 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
PCDH9Q9HC56 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC15.79■□□□□ 0.12
PCDH9Q9HC56 CPD-201ENST00000225719 9394 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
PCDH9Q9HC56 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
PCDH9Q9HC56 C1orf159-202ENST00000379320 2324 ntAPPRIS ALT2 TSL 2 BASIC15.79■□□□□ 0.12
PCDH9Q9HC56 AL359258.3-201ENST00000622910 2331 ntBASIC15.79■□□□□ 0.12
PCDH9Q9HC56 GRK6P1-201ENST00000400595 1711 ntBASIC15.79■□□□□ 0.12
PCDH9Q9HC56 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
PCDH9Q9HC56 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC15.79■□□□□ 0.12
PCDH9Q9HC56 HIST1H2AG-201ENST00000359193 2250 ntAPPRIS P1 BASIC15.79■□□□□ 0.12
PCDH9Q9HC56 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC15.79■□□□□ 0.12
PCDH9Q9HC56 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC15.79■□□□□ 0.12
PCDH9Q9HC56 AL161772.1-201ENST00000610494 4412 ntBASIC15.79■□□□□ 0.12
PCDH9Q9HC56 BRD2-202ENST00000374831 4807 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
PCDH9Q9HC56 DBR1-201ENST00000260803 2666 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
PCDH9Q9HC56 TMEM127-201ENST00000258439 6266 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
PCDH9Q9HC56 SYT13-201ENST00000020926 5144 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
PCDH9Q9HC56 AC018529.2-202ENST00000611482 3087 ntBASIC15.79■□□□□ 0.12
PCDH9Q9HC56 SLC35A2-204ENST00000376521 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC15.78■□□□□ 0.12
PCDH9Q9HC56 CD8A-203ENST00000409511 3048 ntAPPRIS P4 TSL 2 BASIC15.78■□□□□ 0.12
PCDH9Q9HC56 DPYSL3-201ENST00000343218 5476 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
PCDH9Q9HC56 HIPK4-201ENST00000291823 2452 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
PCDH9Q9HC56 OGFRL1-201ENST00000370435 8391 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
PCDH9Q9HC56 SPEG-205ENST00000396698 3379 ntTSL 5 BASIC15.78■□□□□ 0.12
PCDH9Q9HC56 SF1-209ENST00000433274 2317 ntTSL 2 BASIC15.78■□□□□ 0.12
PCDH9Q9HC56 LIMK2-203ENST00000340552 2789 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
PCDH9Q9HC56 TTC28-AS1-219ENST00000454741 5064 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
PCDH9Q9HC56 SLC9A7P1-202ENST00000556476 2239 ntBASIC15.78■□□□□ 0.12
PCDH9Q9HC56 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC15.78■□□□□ 0.12
PCDH9Q9HC56 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
PCDH9Q9HC56 DUOX1-201ENST00000321429 5738 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
PCDH9Q9HC56 MAPK7-203ENST00000395602 3059 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
PCDH9Q9HC56 SEPT9-208ENST00000541152 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
PCDH9Q9HC56 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC15.78■□□□□ 0.12
PCDH9Q9HC56 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
PCDH9Q9HC56 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
PCDH9Q9HC56 TEAD3-201ENST00000338863 2983 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
PCDH9Q9HC56 MIR661-201ENST00000384842 89 ntBASIC15.78■□□□□ 0.12
PCDH9Q9HC56 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
PCDH9Q9HC56 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC15.78■□□□□ 0.12
PCDH9Q9HC56 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC15.78■□□□□ 0.12
PCDH9Q9HC56 AC023310.3-201ENST00000557027 670 ntBASIC15.78■□□□□ 0.12
PCDH9Q9HC56 AC100756.1-201ENST00000562736 682 ntBASIC15.78■□□□□ 0.12
PCDH9Q9HC56 AC138749.3-201ENST00000567691 622 ntBASIC15.78■□□□□ 0.12
PCDH9Q9HC56 RN7SL204P-201ENST00000582831 262 ntBASIC15.78■□□□□ 0.12
PCDH9Q9HC56 LINC02560-201ENST00000596379 459 ntBASIC15.78■□□□□ 0.12
PCDH9Q9HC56 AC000095.1-201ENST00000603208 874 ntBASIC15.78■□□□□ 0.12
PCDH9Q9HC56 AC116165.1-201ENST00000611806 668 ntBASIC15.78■□□□□ 0.12
PCDH9Q9HC56 AL158212.4-201ENST00000624062 1286 ntBASIC15.78■□□□□ 0.12
PCDH9Q9HC56 HOXB4-201ENST00000332503 3757 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
PCDH9Q9HC56 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
PCDH9Q9HC56 AC018442.1-201ENST00000421439 2061 ntBASIC15.78■□□□□ 0.12
PCDH9Q9HC56 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
PCDH9Q9HC56 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
PCDH9Q9HC56 COBL-203ENST00000395542 5339 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
PCDH9Q9HC56 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC15.78■□□□□ 0.12
PCDH9Q9HC56 C18orf25-203ENST00000615052 5462 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
PCDH9Q9HC56 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
PCDH9Q9HC56 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
PCDH9Q9HC56 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC15.78■□□□□ 0.12
PCDH9Q9HC56 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC15.78■□□□□ 0.12
PCDH9Q9HC56 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC15.78■□□□□ 0.12
PCDH9Q9HC56 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
PCDH9Q9HC56 WDR20-203ENST00000335263 2616 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
PCDH9Q9HC56 ABCB7-202ENST00000339447 2234 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
PCDH9Q9HC56 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC15.78■□□□□ 0.12
PCDH9Q9HC56 PHKG2-204ENST00000563588 5539 ntAPPRIS P2 TSL 1 (best) BASIC15.78■□□□□ 0.12
PCDH9Q9HC56 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
PCDH9Q9HC56 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
PCDH9Q9HC56 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC15.77■□□□□ 0.12
PCDH9Q9HC56 SLC52A3-202ENST00000381944 3060 ntTSL 2 BASIC15.77■□□□□ 0.12
PCDH9Q9HC56 B4GALNT1-201ENST00000341156 3036 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
PCDH9Q9HC56 CCDC127-201ENST00000296824 9342 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
PCDH9Q9HC56 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
PCDH9Q9HC56 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC15.77■□□□□ 0.12
PCDH9Q9HC56 DNAJB1-201ENST00000254322 2264 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
PCDH9Q9HC56 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
PCDH9Q9HC56 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
PCDH9Q9HC56 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.12
PCDH9Q9HC56 AC236430.1-201ENST00000402231 743 ntBASIC15.77■□□□□ 0.12
PCDH9Q9HC56 OSM-203ENST00000403463 464 ntTSL 3 BASIC15.77■□□□□ 0.12
PCDH9Q9HC56 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC15.77■□□□□ 0.12
PCDH9Q9HC56 AC002472.2-201ENST00000442739 958 ntBASIC15.77■□□□□ 0.12
PCDH9Q9HC56 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC15.77■□□□□ 0.12
PCDH9Q9HC56 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.12
PCDH9Q9HC56 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC15.77■□□□□ 0.12
PCDH9Q9HC56 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.12
PCDH9Q9HC56 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC15.77■□□□□ 0.12
PCDH9Q9HC56 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC15.77■□□□□ 0.12
PCDH9Q9HC56 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.12
PCDH9Q9HC56 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC15.77■□□□□ 0.12
PCDH9Q9HC56 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC15.77■□□□□ 0.12
PCDH9Q9HC56 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC15.77■□□□□ 0.12
PCDH9Q9HC56 AC008761.3-201ENST00000624803 892 ntBASIC15.77■□□□□ 0.12
PCDH9Q9HC56 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
PCDH9Q9HC56 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC15.77■□□□□ 0.11
PCDH9Q9HC56 KRBOX4-202ENST00000344302 2774 ntAPPRIS ALT2 TSL 2 BASIC15.77■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms