Protein–RNA interactions for Protein: Q96PV0

SYNGAP1, Ras/Rap GTPase-activating protein SynGAP, humanhuman

Predictions only

Length 1,343 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1Q96PV0 PRRC2B-210ENST00000638390 1084 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
SYNGAP1Q96PV0 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
SYNGAP1Q96PV0 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
SYNGAP1Q96PV0 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
SYNGAP1Q96PV0 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
SYNGAP1Q96PV0 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC17.28■□□□□ 0.36
SYNGAP1Q96PV0 CCNA1-204ENST00000630422 1751 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
SYNGAP1Q96PV0 FAM153A-220ENST00000513554 1437 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
SYNGAP1Q96PV0 AC103702.1-201ENST00000548801 2630 ntBASIC17.28■□□□□ 0.36
SYNGAP1Q96PV0 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
SYNGAP1Q96PV0 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SYNGAP1Q96PV0 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC17.28■□□□□ 0.36
SYNGAP1Q96PV0 MBP-202ENST00000355994 2772 ntTSL 5 BASIC17.28■□□□□ 0.36
SYNGAP1Q96PV0 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC17.28■□□□□ 0.36
SYNGAP1Q96PV0 LINC00554-201ENST00000564841 3011 ntBASIC17.28■□□□□ 0.36
SYNGAP1Q96PV0 PRAL-201ENST00000624952 3286 ntBASIC17.28■□□□□ 0.36
SYNGAP1Q96PV0 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC17.28■□□□□ 0.36
SYNGAP1Q96PV0 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC17.28■□□□□ 0.36
SYNGAP1Q96PV0 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC17.28■□□□□ 0.36
SYNGAP1Q96PV0 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
SYNGAP1Q96PV0 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
SYNGAP1Q96PV0 AATBC-203ENST00000448247 1889 ntTSL 2 BASIC17.27■□□□□ 0.36
SYNGAP1Q96PV0 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
SYNGAP1Q96PV0 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
SYNGAP1Q96PV0 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
SYNGAP1Q96PV0 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
SYNGAP1Q96PV0 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC17.27■□□□□ 0.36
SYNGAP1Q96PV0 PRTFDC1-203ENST00000376378 747 ntTSL 2 BASIC17.27■□□□□ 0.36
SYNGAP1Q96PV0 FAM27C-201ENST00000377542 616 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
SYNGAP1Q96PV0 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
SYNGAP1Q96PV0 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
SYNGAP1Q96PV0 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC17.27■□□□□ 0.36
SYNGAP1Q96PV0 RGS5-214ENST00000429865 754 ntTSL 3 BASIC17.27■□□□□ 0.36
SYNGAP1Q96PV0 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC17.27■□□□□ 0.36
SYNGAP1Q96PV0 USE1-202ENST00000445667 795 ntAPPRIS ALT1 TSL 5 BASIC17.27■□□□□ 0.36
SYNGAP1Q96PV0 CHL1-AS2-203ENST00000452919 726 ntTSL 2 BASIC17.27■□□□□ 0.36
SYNGAP1Q96PV0 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC17.27■□□□□ 0.36
SYNGAP1Q96PV0 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC17.27■□□□□ 0.36
SYNGAP1Q96PV0 AC104241.2-201ENST00000532748 789 ntTSL 3 BASIC17.27■□□□□ 0.36
SYNGAP1Q96PV0 FANCA-204ENST00000534992 1088 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
SYNGAP1Q96PV0 AC104758.2-201ENST00000562716 483 ntTSL 3 BASIC17.27■□□□□ 0.36
SYNGAP1Q96PV0 OR10B1P-201ENST00000601666 907 ntBASIC17.27■□□□□ 0.36
SYNGAP1Q96PV0 AC007663.3-201ENST00000609632 465 ntBASIC17.27■□□□□ 0.36
SYNGAP1Q96PV0 TMEM14B-220ENST00000612333 888 ntTSL 3 BASIC17.27■□□□□ 0.36
SYNGAP1Q96PV0 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
SYNGAP1Q96PV0 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
SYNGAP1Q96PV0 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC17.27■□□□□ 0.36
SYNGAP1Q96PV0 H6PD-201ENST00000377403 9146 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
SYNGAP1Q96PV0 AC105250.1-201ENST00000509378 2057 ntBASIC17.27■□□□□ 0.36
SYNGAP1Q96PV0 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
SYNGAP1Q96PV0 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
SYNGAP1Q96PV0 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC17.27■□□□□ 0.36
SYNGAP1Q96PV0 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
SYNGAP1Q96PV0 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
SYNGAP1Q96PV0 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
SYNGAP1Q96PV0 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC17.27■□□□□ 0.36
SYNGAP1Q96PV0 HYMAI-201ENST00000635591 3347 ntBASIC17.27■□□□□ 0.35
SYNGAP1Q96PV0 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
SYNGAP1Q96PV0 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
SYNGAP1Q96PV0 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
SYNGAP1Q96PV0 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
SYNGAP1Q96PV0 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
SYNGAP1Q96PV0 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
SYNGAP1Q96PV0 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
SYNGAP1Q96PV0 ATG10-203ENST00000458350 1795 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
SYNGAP1Q96PV0 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
SYNGAP1Q96PV0 CNBP-208ENST00000504813 1549 ntAPPRIS ALT1 TSL 2 BASIC17.26■□□□□ 0.35
SYNGAP1Q96PV0 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
SYNGAP1Q96PV0 PPP1R26-202ENST00000401470 4769 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
SYNGAP1Q96PV0 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SYNGAP1Q96PV0 C1QB-201ENST00000314933 1044 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
SYNGAP1Q96PV0 HIST2H2AA3-201ENST00000369159 549 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
SYNGAP1Q96PV0 MCFD2-204ENST00000409207 1113 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
SYNGAP1Q96PV0 ZSCAN32-204ENST00000422427 1267 ntTSL 2 BASIC17.26■□□□□ 0.35
SYNGAP1Q96PV0 HNRNPA1P63-201ENST00000427917 963 ntBASIC17.26■□□□□ 0.35
SYNGAP1Q96PV0 AL157392.3-216ENST00000437446 462 ntTSL 3 BASIC17.26■□□□□ 0.35
SYNGAP1Q96PV0 BANF1-202ENST00000445560 946 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SYNGAP1Q96PV0 RPL23A-206ENST00000496182 636 ntTSL 3 BASIC17.26■□□□□ 0.35
SYNGAP1Q96PV0 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
SYNGAP1Q96PV0 ANO1-AS1-201ENST00000524987 646 ntTSL 3 BASIC17.26■□□□□ 0.35
SYNGAP1Q96PV0 AP003171.2-201ENST00000528208 925 ntBASIC17.26■□□□□ 0.35
SYNGAP1Q96PV0 MIR3619-201ENST00000579667 83 ntBASIC17.26■□□□□ 0.35
SYNGAP1Q96PV0 NDUFV2P1-201ENST00000596415 907 ntBASIC17.26■□□□□ 0.35
SYNGAP1Q96PV0 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SYNGAP1Q96PV0 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SYNGAP1Q96PV0 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
SYNGAP1Q96PV0 FGF1-201ENST00000337706 1469 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
SYNGAP1Q96PV0 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
SYNGAP1Q96PV0 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
SYNGAP1Q96PV0 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
SYNGAP1Q96PV0 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SYNGAP1Q96PV0 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
SYNGAP1Q96PV0 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
SYNGAP1Q96PV0 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC17.26■□□□□ 0.35
SYNGAP1Q96PV0 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC17.26■□□□□ 0.35
SYNGAP1Q96PV0 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SYNGAP1Q96PV0 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SYNGAP1Q96PV0 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
SYNGAP1Q96PV0 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SYNGAP1Q96PV0 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC17.25■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms