Protein–RNA interactions for Protein: Q70EL4

USP43, Ubiquitin carboxyl-terminal hydrolase 43, humanhuman

Predictions only

Length 1,123 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP43Q70EL4 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
USP43Q70EL4 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC14.03□□□□□ -0.16
USP43Q70EL4 AC090826.2-201ENST00000568496 4946 ntTSL 2 BASIC14.03□□□□□ -0.16
USP43Q70EL4 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
USP43Q70EL4 TBC1D8B-203ENST00000357242 5717 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
USP43Q70EL4 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
USP43Q70EL4 PAPD7-207ENST00000631941 1902 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
USP43Q70EL4 CSAD-203ENST00000379846 1962 ntTSL 5 BASIC14.03□□□□□ -0.16
USP43Q70EL4 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC14.03□□□□□ -0.16
USP43Q70EL4 SETD1B-203ENST00000604567 5969 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
USP43Q70EL4 AC152010.1-201ENST00000415779 2006 ntBASIC14.03□□□□□ -0.16
USP43Q70EL4 GABRA1-201ENST00000023897 2083 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
USP43Q70EL4 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
USP43Q70EL4 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
USP43Q70EL4 PBXIP1-202ENST00000368463 3212 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
USP43Q70EL4 CASP2-207ENST00000619992 4006 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
USP43Q70EL4 YTHDF3-205ENST00000539294 5163 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
USP43Q70EL4 KIAA0319-203ENST00000535378 6896 ntAPPRIS ALT2 TSL 2 BASIC14.02□□□□□ -0.16
USP43Q70EL4 CUX2-201ENST00000261726 6844 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
USP43Q70EL4 DAAM2-201ENST00000274867 6194 ntAPPRIS ALT1 TSL 1 (best) BASIC14.02□□□□□ -0.16
USP43Q70EL4 ZNF559-202ENST00000393883 5095 ntAPPRIS P3 TSL 2 BASIC14.02□□□□□ -0.16
USP43Q70EL4 SEMA4B-201ENST00000332496 3781 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
USP43Q70EL4 NTN4-201ENST00000343702 3615 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
USP43Q70EL4 ZW10-201ENST00000200135 2992 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
USP43Q70EL4 PRNP-201ENST00000379440 2657 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
USP43Q70EL4 HS6ST3-201ENST00000376705 7804 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
USP43Q70EL4 HIST1H2AG-201ENST00000359193 2250 ntAPPRIS P1 BASIC14.02□□□□□ -0.16
USP43Q70EL4 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
USP43Q70EL4 GID4-201ENST00000268719 4237 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
USP43Q70EL4 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
USP43Q70EL4 AC129492.6-201ENST00000611383 1305 ntBASIC14.02□□□□□ -0.17
USP43Q70EL4 CD82-202ENST00000342935 967 ntTSL 5 BASIC14.02□□□□□ -0.17
USP43Q70EL4 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
USP43Q70EL4 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
USP43Q70EL4 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC14.02□□□□□ -0.17
USP43Q70EL4 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC14.02□□□□□ -0.17
USP43Q70EL4 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
USP43Q70EL4 RIN3-211ENST00000557762 517 ntTSL 3 BASIC14.02□□□□□ -0.17
USP43Q70EL4 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC14.02□□□□□ -0.17
USP43Q70EL4 METTL23-205ENST00000588302 925 ntTSL 5 BASIC14.02□□□□□ -0.17
USP43Q70EL4 AC011467.4-201ENST00000594891 528 ntBASIC14.02□□□□□ -0.17
USP43Q70EL4 AL078644.1-201ENST00000609881 752 ntBASIC14.02□□□□□ -0.17
USP43Q70EL4 AC007064.4-201ENST00000637740 555 ntBASIC14.02□□□□□ -0.17
USP43Q70EL4 KCNC2-202ENST00000350228 3344 ntAPPRIS ALT2 TSL 2 BASIC14.02□□□□□ -0.17
USP43Q70EL4 ERVK13-1-207ENST00000569465 3321 ntTSL 2 BASIC14.02□□□□□ -0.17
USP43Q70EL4 ANKRD13B-201ENST00000394859 3214 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.17
USP43Q70EL4 SFSWAP-210ENST00000541286 3219 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
USP43Q70EL4 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
USP43Q70EL4 LBH-201ENST00000395323 2933 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
USP43Q70EL4 MAP3K12-203ENST00000547035 2944 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.17
USP43Q70EL4 CAP2-209ENST00000616440 2776 ntTSL 2 BASIC14.02□□□□□ -0.17
USP43Q70EL4 LMAN2L-201ENST00000264963 2397 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
USP43Q70EL4 MTHFR-210ENST00000641407 2387 ntBASIC14.02□□□□□ -0.17
USP43Q70EL4 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
USP43Q70EL4 AC011474.4-201ENST00000623523 2076 ntBASIC14.02□□□□□ -0.17
USP43Q70EL4 KIRREL3-205ENST00000529097 3397 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
USP43Q70EL4 SMTN-202ENST00000347557 3130 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
USP43Q70EL4 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
USP43Q70EL4 USP10-201ENST00000219473 3009 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
USP43Q70EL4 SAR1A-204ENST00000373241 2996 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
USP43Q70EL4 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
USP43Q70EL4 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
USP43Q70EL4 ZNF362-201ENST00000373428 2936 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
USP43Q70EL4 TNPO2-218ENST00000592287 2914 ntAPPRIS P4 TSL 1 (best) BASIC14.01□□□□□ -0.17
USP43Q70EL4 FARS2-202ENST00000324331 1692 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
USP43Q70EL4 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
USP43Q70EL4 FKBP5-203ENST00000539068 3827 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
USP43Q70EL4 CNKSR2-203ENST00000425654 5668 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
USP43Q70EL4 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
USP43Q70EL4 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
USP43Q70EL4 GAL3ST4-202ENST00000411994 1404 ntTSL 2 BASIC14.01□□□□□ -0.17
USP43Q70EL4 ZSWIM8-221ENST00000604729 6075 ntAPPRIS ALT1 TSL 5 BASIC14.01□□□□□ -0.17
USP43Q70EL4 C20orf203-202ENST00000608990 5076 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
USP43Q70EL4 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
USP43Q70EL4 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
USP43Q70EL4 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC14.01□□□□□ -0.17
USP43Q70EL4 FRMD5-201ENST00000402883 4091 ntTSL 5 BASIC14.01□□□□□ -0.17
USP43Q70EL4 KIAA0141-201ENST00000194118 2203 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
USP43Q70EL4 CCND3-201ENST00000372987 2233 ntTSL 2 BASIC14.01□□□□□ -0.17
USP43Q70EL4 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC14.01□□□□□ -0.17
USP43Q70EL4 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC14.01□□□□□ -0.17
USP43Q70EL4 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
USP43Q70EL4 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
USP43Q70EL4 MIR770-201ENST00000390219 98 ntBASIC14.01□□□□□ -0.17
USP43Q70EL4 RAC2-202ENST00000401529 569 ntTSL 4 BASIC14.01□□□□□ -0.17
USP43Q70EL4 PTCHD3P3-201ENST00000403073 906 ntBASIC14.01□□□□□ -0.17
USP43Q70EL4 SYS1-203ENST00000414310 795 ntTSL 3 BASIC14.01□□□□□ -0.17
USP43Q70EL4 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC14.01□□□□□ -0.17
USP43Q70EL4 RHOQP3-201ENST00000437982 621 ntBASIC14.01□□□□□ -0.17
USP43Q70EL4 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC14.01□□□□□ -0.17
USP43Q70EL4 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC14.01□□□□□ -0.17
USP43Q70EL4 MTRF1LP2-201ENST00000506027 1122 ntBASIC14.01□□□□□ -0.17
USP43Q70EL4 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC14.01□□□□□ -0.17
USP43Q70EL4 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC14.01□□□□□ -0.17
USP43Q70EL4 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
USP43Q70EL4 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC14.01□□□□□ -0.17
USP43Q70EL4 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC14.01□□□□□ -0.17
USP43Q70EL4 SYMPK-213ENST00000599460 5449 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
USP43Q70EL4 CEP135-202ENST00000422247 2092 ntTSL 2 BASIC14.01□□□□□ -0.17
USP43Q70EL4 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC14.01□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms