Protein–RNA interactions for Protein: P55283

CDH4, Cadherin-4, humanhuman

Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH4P55283 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
CDH4P55283 HELZ2-202ENST00000427522 7827 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
CDH4P55283 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
CDH4P55283 FLT3LG-201ENST00000204637 1046 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
CDH4P55283 C1QB-201ENST00000314933 1044 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
CDH4P55283 NAA10-201ENST00000370009 837 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
CDH4P55283 NAA10-203ENST00000370015 1002 ntTSL 5 BASIC15.56■□□□□ 0.08
CDH4P55283 CD8B2-202ENST00000417670 633 ntBASIC15.56■□□□□ 0.08
CDH4P55283 AC099552.2-201ENST00000418523 456 ntTSL 3 BASIC15.56■□□□□ 0.08
CDH4P55283 AC233976.1-201ENST00000425150 451 ntTSL 3 BASIC15.56■□□□□ 0.08
CDH4P55283 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
CDH4P55283 AC119751.2-201ENST00000504529 210 ntBASIC15.56■□□□□ 0.08
CDH4P55283 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC15.56■□□□□ 0.08
CDH4P55283 ANAPC15-214ENST00000543587 883 ntAPPRIS ALT1 TSL 1 (best) BASIC15.56■□□□□ 0.08
CDH4P55283 AC079316.1-201ENST00000548397 411 ntBASIC15.56■□□□□ 0.08
CDH4P55283 LINC02299-201ENST00000556669 430 ntTSL 5 BASIC15.56■□□□□ 0.08
CDH4P55283 CCL5-202ENST00000605140 1244 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
CDH4P55283 COX11-210ENST00000639671 696 ntBASIC15.56■□□□□ 0.08
CDH4P55283 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
CDH4P55283 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC15.56■□□□□ 0.08
CDH4P55283 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
CDH4P55283 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC15.56■□□□□ 0.08
CDH4P55283 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
CDH4P55283 LINC01185-202ENST00000452343 1705 ntTSL 2 BASIC15.56■□□□□ 0.08
CDH4P55283 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC15.56■□□□□ 0.08
CDH4P55283 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
CDH4P55283 PCDHGB8P-201ENST00000502926 1973 ntBASIC15.56■□□□□ 0.08
CDH4P55283 AC104640.1-201ENST00000562617 2109 ntBASIC15.56■□□□□ 0.08
CDH4P55283 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
CDH4P55283 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC15.56■□□□□ 0.08
CDH4P55283 HGNC:18790-203ENST00000433139 2254 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
CDH4P55283 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC15.56■□□□□ 0.08
CDH4P55283 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
CDH4P55283 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC15.56■□□□□ 0.08
CDH4P55283 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
CDH4P55283 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC15.56■□□□□ 0.08
CDH4P55283 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
CDH4P55283 AC063926.3-201ENST00000624734 5658 ntBASIC15.56■□□□□ 0.08
CDH4P55283 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
CDH4P55283 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC15.55■□□□□ 0.08
CDH4P55283 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
CDH4P55283 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
CDH4P55283 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC15.55■□□□□ 0.08
CDH4P55283 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
CDH4P55283 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
CDH4P55283 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
CDH4P55283 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
CDH4P55283 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
CDH4P55283 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC15.55■□□□□ 0.08
CDH4P55283 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
CDH4P55283 TMEM127-201ENST00000258439 6266 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
CDH4P55283 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC15.55■□□□□ 0.08
CDH4P55283 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
CDH4P55283 ARID4B-202ENST00000349213 5811 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
CDH4P55283 ZBED1P1-201ENST00000502364 1930 ntBASIC15.55■□□□□ 0.08
CDH4P55283 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
CDH4P55283 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC15.55■□□□□ 0.08
CDH4P55283 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
CDH4P55283 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC15.55■□□□□ 0.08
CDH4P55283 DMAC2-204ENST00000438807 1454 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
CDH4P55283 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC15.55■□□□□ 0.08
CDH4P55283 CHST10-203ENST00000409701 1338 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
CDH4P55283 ICAM2-201ENST00000412356 1334 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
CDH4P55283 ZSCAN30-212ENST00000639929 1305 ntTSL 5 BASIC15.55■□□□□ 0.08
CDH4P55283 AC006001.1-201ENST00000325130 474 ntBASIC15.55■□□□□ 0.08
CDH4P55283 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC15.55■□□□□ 0.08
CDH4P55283 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
CDH4P55283 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC15.55■□□□□ 0.08
CDH4P55283 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
CDH4P55283 GBGT1-202ENST00000372038 847 ntTSL 3 BASIC15.55■□□□□ 0.08
CDH4P55283 MPV17-206ENST00000402722 827 ntTSL 3 BASIC15.55■□□□□ 0.08
CDH4P55283 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC15.55■□□□□ 0.08
CDH4P55283 KCNQ1-AS1-201ENST00000440887 1084 ntTSL 5 BASIC15.55■□□□□ 0.08
CDH4P55283 AC103563.7-201ENST00000448734 478 ntTSL 3 BASIC15.55■□□□□ 0.08
CDH4P55283 KRT223P-202ENST00000449164 1292 ntBASIC15.55■□□□□ 0.08
CDH4P55283 FO681548.1-201ENST00000455617 1132 ntBASIC15.55■□□□□ 0.08
CDH4P55283 AC026434.2-201ENST00000506094 1078 ntBASIC15.55■□□□□ 0.08
CDH4P55283 AHRR-211ENST00000515206 462 ntTSL 5 BASIC15.55■□□□□ 0.08
CDH4P55283 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
CDH4P55283 AC078819.1-201ENST00000547454 765 ntBASIC15.55■□□□□ 0.08
CDH4P55283 AC012085.1-201ENST00000548270 765 ntBASIC15.55■□□□□ 0.08
CDH4P55283 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
CDH4P55283 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC15.55■□□□□ 0.08
CDH4P55283 RPS15-202ENST00000585665 467 ntTSL 3 BASIC15.55■□□□□ 0.08
CDH4P55283 AC005597.1-201ENST00000588092 420 ntTSL 3 BASIC15.55■□□□□ 0.08
CDH4P55283 AC138951.2-201ENST00000623455 1161 ntBASIC15.55■□□□□ 0.08
CDH4P55283 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC15.55■□□□□ 0.08
CDH4P55283 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC15.55■□□□□ 0.08
CDH4P55283 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC15.55■□□□□ 0.08
CDH4P55283 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC15.55■□□□□ 0.08
CDH4P55283 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
CDH4P55283 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
CDH4P55283 AC067930.6-201ENST00000623257 4947 ntBASIC15.55■□□□□ 0.08
CDH4P55283 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
CDH4P55283 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
CDH4P55283 LTBP2-201ENST00000261978 8567 ntAPPRIS P2 TSL 1 (best) BASIC15.55■□□□□ 0.08
CDH4P55283 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC15.55■□□□□ 0.08
CDH4P55283 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC15.55■□□□□ 0.08
CDH4P55283 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC15.55■□□□□ 0.08
CDH4P55283 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 55.7 ms