Protein–RNA interactions for Protein: P53621

COPA, Coatomer subunit alpha, humanhuman

Predictions only

Length 1,224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COPAP53621 AL365209.1-201ENST00000624418 6473 ntBASIC15.82■□□□□ 0.12
COPAP53621 CHL1-202ENST00000397491 5235 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
COPAP53621 FURIN-207ENST00000618099 4345 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
COPAP53621 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
COPAP53621 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
COPAP53621 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
COPAP53621 BLMH-201ENST00000261714 2365 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
COPAP53621 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
COPAP53621 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
COPAP53621 LBX2-201ENST00000341396 886 ntTSL 3 BASIC15.82■□□□□ 0.12
COPAP53621 MGST3-203ENST00000367885 680 ntTSL 2 BASIC15.82■□□□□ 0.12
COPAP53621 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
COPAP53621 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC15.82■□□□□ 0.12
COPAP53621 BNIP3P42-201ENST00000454982 569 ntBASIC15.82■□□□□ 0.12
COPAP53621 KRT18P43-201ENST00000469825 1281 ntBASIC15.82■□□□□ 0.12
COPAP53621 CMC2-214ENST00000565925 640 ntTSL 5 BASIC15.82■□□□□ 0.12
COPAP53621 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC15.82■□□□□ 0.12
COPAP53621 GPX4-206ENST00000588919 803 ntTSL 2 BASIC15.82■□□□□ 0.12
COPAP53621 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC15.82■□□□□ 0.12
COPAP53621 BNIP3P29-201ENST00000598302 571 ntBASIC15.82■□□□□ 0.12
COPAP53621 AL022328.1-201ENST00000610050 478 ntBASIC15.82■□□□□ 0.12
COPAP53621 AC011447.5-201ENST00000616168 564 ntBASIC15.82■□□□□ 0.12
COPAP53621 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC15.82■□□□□ 0.12
COPAP53621 GSK3B-201ENST00000264235 7711 ntAPPRIS ALT1 TSL 1 (best) BASIC15.82■□□□□ 0.12
COPAP53621 DIABLO-203ENST00000353548 1345 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
COPAP53621 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
COPAP53621 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
COPAP53621 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
COPAP53621 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
COPAP53621 PPP1R26-204ENST00000604351 4640 ntAPPRIS P1 TSL 3 BASIC15.82■□□□□ 0.12
COPAP53621 SNX18-202ENST00000343017 3140 ntBASIC15.82■□□□□ 0.12
COPAP53621 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC15.82■□□□□ 0.12
COPAP53621 C18orf25-206ENST00000619301 5264 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
COPAP53621 PATZ1-202ENST00000266269 3781 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
COPAP53621 PHLDA1-203ENST00000619060 5913 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
COPAP53621 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC15.82■□□□□ 0.12
COPAP53621 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
COPAP53621 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
COPAP53621 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
COPAP53621 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC15.82■□□□□ 0.12
COPAP53621 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC15.82■□□□□ 0.12
COPAP53621 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
COPAP53621 COCH-202ENST00000396618 2536 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
COPAP53621 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
COPAP53621 UBXN2B-201ENST00000399598 5068 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
COPAP53621 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC15.81■□□□□ 0.12
COPAP53621 TTC22-202ENST00000371276 3345 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
COPAP53621 SPEG-205ENST00000396698 3379 ntTSL 5 BASIC15.81■□□□□ 0.12
COPAP53621 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
COPAP53621 PCDHA3-202ENST00000532566 4594 ntBASIC15.81■□□□□ 0.12
COPAP53621 CASR-202ENST00000498619 5009 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
COPAP53621 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
COPAP53621 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
COPAP53621 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC15.81■□□□□ 0.12
COPAP53621 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
COPAP53621 SHBG-202ENST00000380450 1271 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
COPAP53621 SLC18A1-203ENST00000381608 1419 ntTSL 5 BASIC15.81■□□□□ 0.12
COPAP53621 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
COPAP53621 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC15.81■□□□□ 0.12
COPAP53621 API5-202ENST00000420461 2009 ntTSL 2 BASIC15.81■□□□□ 0.12
COPAP53621 CICP13-201ENST00000422015 2789 ntBASIC15.81■□□□□ 0.12
COPAP53621 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC15.81■□□□□ 0.12
COPAP53621 NFATC4-204ENST00000424781 5488 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
COPAP53621 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
COPAP53621 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC15.81■□□□□ 0.12
COPAP53621 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
COPAP53621 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
COPAP53621 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC15.81■□□□□ 0.12
COPAP53621 AP001889.1-201ENST00000525414 633 ntBASIC15.81■□□□□ 0.12
COPAP53621 AC068587.3-201ENST00000526613 355 ntBASIC15.81■□□□□ 0.12
COPAP53621 FLJ27354-203ENST00000526694 851 ntTSL 2 BASIC15.81■□□□□ 0.12
COPAP53621 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
COPAP53621 PCK2-203ENST00000545054 2505 ntTSL 2 BASIC15.81■□□□□ 0.12
COPAP53621 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
COPAP53621 AC023908.3-201ENST00000564211 3047 ntBASIC15.81■□□□□ 0.12
COPAP53621 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
COPAP53621 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC15.81■□□□□ 0.12
COPAP53621 AC011477.6-201ENST00000604980 1927 ntBASIC15.81■□□□□ 0.12
COPAP53621 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC15.81■□□□□ 0.12
COPAP53621 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC15.81■□□□□ 0.12
COPAP53621 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
COPAP53621 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
COPAP53621 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC15.8■□□□□ 0.12
COPAP53621 WDR97-201ENST00000323662 6916 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
COPAP53621 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC15.8■□□□□ 0.12
COPAP53621 OPA1-201ENST00000361150 6330 ntTSL 5 BASIC15.8■□□□□ 0.12
COPAP53621 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
COPAP53621 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
COPAP53621 GRIN3A-201ENST00000361820 7770 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
COPAP53621 AC007292.2-201ENST00000593524 1812 ntBASIC15.8■□□□□ 0.12
COPAP53621 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
COPAP53621 LINC01185-202ENST00000452343 1705 ntTSL 2 BASIC15.8■□□□□ 0.12
COPAP53621 PMS1-221ENST00000624204 3417 ntTSL 2 BASIC15.8■□□□□ 0.12
COPAP53621 LOX-206ENST00000639739 1626 ntTSL 5 BASIC15.8■□□□□ 0.12
COPAP53621 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC15.8■□□□□ 0.12
COPAP53621 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
COPAP53621 CYP2AB1P-202ENST00000454440 1456 ntBASIC15.8■□□□□ 0.12
COPAP53621 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
COPAP53621 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC15.8■□□□□ 0.12
COPAP53621 KANK2-207ENST00000589894 2703 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 55 ms