Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC16.18■□□□□ 0.18
LIG3P49916 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
LIG3P49916 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC16.18■□□□□ 0.18
LIG3P49916 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC16.18■□□□□ 0.18
LIG3P49916 PAM16-215ENST00000577031 548 ntTSL 4 BASIC16.18■□□□□ 0.18
LIG3P49916 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC16.18■□□□□ 0.18
LIG3P49916 AC092364.2-202ENST00000597012 1073 ntBASIC16.18■□□□□ 0.18
LIG3P49916 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
LIG3P49916 AJ011932.1-201ENST00000621707 465 ntBASIC16.18■□□□□ 0.18
LIG3P49916 AL590560.3-201ENST00000623350 461 ntBASIC16.18■□□□□ 0.18
LIG3P49916 EPHB4-210ENST00000616502 3737 ntTSL 5 BASIC16.18■□□□□ 0.18
LIG3P49916 SLC4A7-213ENST00000454389 4159 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
LIG3P49916 NUP98-201ENST00000324932 6973 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
LIG3P49916 IKBKB-217ENST00000520810 3086 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
LIG3P49916 AL928921.2-201ENST00000641325 2442 ntBASIC16.18■□□□□ 0.18
LIG3P49916 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC16.18■□□□□ 0.18
LIG3P49916 STXBP6-201ENST00000323944 4132 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
LIG3P49916 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC16.18■□□□□ 0.18
LIG3P49916 TMEM132E-203ENST00000631683 4379 ntAPPRIS P2 TSL 5 BASIC16.18■□□□□ 0.18
LIG3P49916 PTPA-205ENST00000357197 2653 ntTSL 2 BASIC16.18■□□□□ 0.18
LIG3P49916 PABPC1-201ENST00000318607 3485 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
LIG3P49916 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
LIG3P49916 FAM47E-STBD1-204ENST00000515604 3029 ntAPPRIS P2 TSL 2 BASIC16.18■□□□□ 0.18
LIG3P49916 AC079336.5-201ENST00000581360 2480 ntTSL 2 BASIC16.18■□□□□ 0.18
LIG3P49916 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
LIG3P49916 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
LIG3P49916 TTLL10-AS1-201ENST00000379317 3532 ntTSL 2 BASIC16.18■□□□□ 0.18
LIG3P49916 ZNF747-202ENST00000395094 3504 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
LIG3P49916 DBN1-203ENST00000393565 2701 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
LIG3P49916 COL11A2-202ENST00000361917 6104 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
LIG3P49916 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
LIG3P49916 IQCE-201ENST00000325979 2179 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
LIG3P49916 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC16.17■□□□□ 0.18
LIG3P49916 TRAK1-203ENST00000396175 5033 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
LIG3P49916 FGFR3-203ENST00000352904 3733 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
LIG3P49916 OSBPL5-203ENST00000389989 3619 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
LIG3P49916 AC140479.7-201ENST00000636301 2332 ntBASIC16.17■□□□□ 0.18
LIG3P49916 SPOCK3-210ENST00000506886 2947 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
LIG3P49916 CEP131-202ENST00000374782 3505 ntAPPRIS P3 TSL 5 BASIC16.17■□□□□ 0.18
LIG3P49916 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
LIG3P49916 VIPR1-202ENST00000433647 3161 ntTSL 2 BASIC16.17■□□□□ 0.18
LIG3P49916 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
LIG3P49916 AMT-204ENST00000427987 1646 ntTSL 5 BASIC16.17■□□□□ 0.18
LIG3P49916 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC16.17■□□□□ 0.18
LIG3P49916 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
LIG3P49916 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
LIG3P49916 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
LIG3P49916 AL139010.1-201ENST00000454878 894 ntBASIC16.17■□□□□ 0.18
LIG3P49916 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
LIG3P49916 LY6E-204ENST00000519546 971 ntTSL 2 BASIC16.17■□□□□ 0.18
LIG3P49916 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
LIG3P49916 TEX28P1-201ENST00000613479 1221 ntBASIC16.17■□□□□ 0.18
LIG3P49916 TEX28P2-201ENST00000617764 1221 ntBASIC16.17■□□□□ 0.18
LIG3P49916 AC005562.1-201ENST00000583030 3219 ntBASIC16.17■□□□□ 0.18
LIG3P49916 TBPL2-201ENST00000247219 2037 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
LIG3P49916 THUMPD3-AS1-202ENST00000468186 3253 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
LIG3P49916 MARVELD3-201ENST00000268485 2912 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
LIG3P49916 RALGPS2-204ENST00000367635 5834 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
LIG3P49916 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
LIG3P49916 CHRNA3-201ENST00000326828 3202 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
LIG3P49916 GLI2-203ENST00000361492 6768 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
LIG3P49916 REXO1L1P-202ENST00000608646 1974 ntBASIC16.17■□□□□ 0.18
LIG3P49916 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC16.17■□□□□ 0.18
LIG3P49916 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC16.16■□□□□ 0.18
LIG3P49916 ARHGEF7-201ENST00000218789 5233 ntTSL 5 BASIC16.16■□□□□ 0.18
LIG3P49916 NOC2L-201ENST00000327044 2790 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
LIG3P49916 SRC-202ENST00000373558 4304 ntTSL 5 BASIC16.16■□□□□ 0.18
LIG3P49916 CEP164-201ENST00000278935 5630 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
LIG3P49916 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC16.16■□□□□ 0.18
LIG3P49916 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC16.16■□□□□ 0.18
LIG3P49916 HGNC:18790-203ENST00000433139 2254 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
LIG3P49916 CUL3-201ENST00000264414 6741 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
LIG3P49916 GLI2-210ENST00000452319 6799 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
LIG3P49916 ANKRD13B-201ENST00000394859 3214 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
LIG3P49916 EHMT2-201ENST00000375528 4047 ntAPPRIS ALT2 TSL 2 BASIC16.16■□□□□ 0.18
LIG3P49916 PLK2-201ENST00000274289 2960 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
LIG3P49916 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
LIG3P49916 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
LIG3P49916 NRP2-205ENST00000412873 2730 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
LIG3P49916 GRM5-205ENST00000455756 7927 ntAPPRIS P3 TSL 2 BASIC16.16■□□□□ 0.18
LIG3P49916 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
LIG3P49916 RTF1-201ENST00000389629 5021 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
LIG3P49916 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
LIG3P49916 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
LIG3P49916 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
LIG3P49916 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
LIG3P49916 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC16.16■□□□□ 0.18
LIG3P49916 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC16.16■□□□□ 0.18
LIG3P49916 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
LIG3P49916 MIR648-201ENST00000385046 94 ntBASIC16.16■□□□□ 0.18
LIG3P49916 HNRNPA3P1-201ENST00000401429 1139 ntBASIC16.16■□□□□ 0.18
LIG3P49916 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC16.16■□□□□ 0.18
LIG3P49916 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
LIG3P49916 HNRNPA3P5-201ENST00000455201 833 ntBASIC16.16■□□□□ 0.18
LIG3P49916 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC16.16■□□□□ 0.18
LIG3P49916 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC16.16■□□□□ 0.18
LIG3P49916 MPI-209ENST00000564003 1195 ntTSL 2 BASIC16.16■□□□□ 0.18
LIG3P49916 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC16.16■□□□□ 0.18
LIG3P49916 GAS2L2-202ENST00000604641 3014 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
LIG3P49916 TBC1D1-201ENST00000261439 5700 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms