Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 DYDC2-204ENST00000372199 2254 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
HOXA1P49639 PRKCB-201ENST00000303531 7969 ntAPPRIS P4 TSL 1 (best) BASIC12.78□□□□□ -0.36
HOXA1P49639 ZBTB45P2-201ENST00000452245 1531 ntBASIC12.78□□□□□ -0.36
HOXA1P49639 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC12.78□□□□□ -0.36
HOXA1P49639 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC12.78□□□□□ -0.36
HOXA1P49639 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC12.78□□□□□ -0.36
HOXA1P49639 OSBPL5-203ENST00000389989 3619 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
HOXA1P49639 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
HOXA1P49639 SF1-205ENST00000377394 2854 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
HOXA1P49639 MBD4-201ENST00000249910 2470 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
HOXA1P49639 C21orf62-AS1-201ENST00000382375 2453 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
HOXA1P49639 MROH2A-201ENST00000389758 5355 ntAPPRIS ALT2 TSL 5 BASIC12.78□□□□□ -0.36
HOXA1P49639 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC12.78□□□□□ -0.36
HOXA1P49639 FSTL4-201ENST00000265342 5419 ntAPPRIS P1 TSL 5 BASIC12.78□□□□□ -0.36
HOXA1P49639 ZBTB7B-207ENST00000535420 3777 ntAPPRIS P3 TSL 5 BASIC12.78□□□□□ -0.36
HOXA1P49639 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
HOXA1P49639 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
HOXA1P49639 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC12.78□□□□□ -0.36
HOXA1P49639 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC12.78□□□□□ -0.36
HOXA1P49639 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC12.78□□□□□ -0.36
HOXA1P49639 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC12.78□□□□□ -0.36
HOXA1P49639 PPIE-208ENST00000470213 927 ntTSL 3 BASIC12.78□□□□□ -0.36
HOXA1P49639 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC12.78□□□□□ -0.36
HOXA1P49639 SMN2-210ENST00000511812 867 ntTSL 2 BASIC12.78□□□□□ -0.36
HOXA1P49639 RN7SL510P-201ENST00000581311 263 ntBASIC12.78□□□□□ -0.36
HOXA1P49639 AC068137.2-201ENST00000605408 478 ntBASIC12.78□□□□□ -0.36
HOXA1P49639 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
HOXA1P49639 IRF5-214ENST00000613821 595 ntTSL 5 BASIC12.78□□□□□ -0.36
HOXA1P49639 AL691432.3-201ENST00000621860 400 ntBASIC12.78□□□□□ -0.36
HOXA1P49639 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC12.78□□□□□ -0.36
HOXA1P49639 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC12.78□□□□□ -0.36
HOXA1P49639 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC12.78□□□□□ -0.36
HOXA1P49639 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC12.78□□□□□ -0.36
HOXA1P49639 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC12.78□□□□□ -0.36
HOXA1P49639 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC12.78□□□□□ -0.36
HOXA1P49639 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
HOXA1P49639 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
HOXA1P49639 GORASP2-201ENST00000234160 3173 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
HOXA1P49639 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
HOXA1P49639 AC015712.6-201ENST00000431060 5068 ntTSL 2 BASIC12.78□□□□□ -0.36
HOXA1P49639 FLII-221ENST00000578558 2377 ntTSL 5 BASIC12.78□□□□□ -0.36
HOXA1P49639 C10orf88-204ENST00000481909 2482 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
HOXA1P49639 HMGA2-204ENST00000403681 4473 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
HOXA1P49639 TRIM56-201ENST00000306085 10952 ntAPPRIS P2 TSL 1 (best) BASIC12.78□□□□□ -0.36
HOXA1P49639 SFMBT1-201ENST00000394752 4548 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
HOXA1P49639 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC12.78□□□□□ -0.36
HOXA1P49639 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC12.78□□□□□ -0.36
HOXA1P49639 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
HOXA1P49639 SCD5-202ENST00000319540 3101 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
HOXA1P49639 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
HOXA1P49639 OR2V1-202ENST00000641318 2665 ntAPPRIS P1 BASIC12.77□□□□□ -0.36
HOXA1P49639 DDX21-202ENST00000620315 4829 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
HOXA1P49639 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
HOXA1P49639 TMEM2-202ENST00000377044 6523 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.36
HOXA1P49639 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC12.77□□□□□ -0.36
HOXA1P49639 UNQ6494-202ENST00000617436 2163 ntTSL 2 BASIC12.77□□□□□ -0.36
HOXA1P49639 PLCD4-202ENST00000417849 2738 ntAPPRIS P2 TSL 5 BASIC12.77□□□□□ -0.36
HOXA1P49639 RNF26-201ENST00000311413 2787 ntAPPRIS P1 BASIC12.77□□□□□ -0.36
HOXA1P49639 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
HOXA1P49639 TRIM80P-201ENST00000455685 2848 ntBASIC12.77□□□□□ -0.36
HOXA1P49639 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
HOXA1P49639 LDLRAD2-201ENST00000344642 4012 ntAPPRIS P1 TSL 2 BASIC12.77□□□□□ -0.36
HOXA1P49639 SPPL2B-209ENST00000613503 3456 ntAPPRIS P4 TSL 1 (best) BASIC12.77□□□□□ -0.36
HOXA1P49639 MAGI2-218ENST00000630991 2349 ntTSL 2 BASIC12.77□□□□□ -0.36
HOXA1P49639 INO80-202ENST00000401393 5991 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
HOXA1P49639 SAFB-201ENST00000292123 3042 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.36
HOXA1P49639 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
HOXA1P49639 USP3-204ENST00000540797 5474 ntTSL 2 BASIC12.77□□□□□ -0.37
HOXA1P49639 SLC26A6-213ENST00000455886 2460 ntTSL 2 BASIC12.77□□□□□ -0.37
HOXA1P49639 ARSH-201ENST00000381130 1875 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
HOXA1P49639 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
HOXA1P49639 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC12.77□□□□□ -0.37
HOXA1P49639 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
HOXA1P49639 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC12.77□□□□□ -0.37
HOXA1P49639 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC12.77□□□□□ -0.37
HOXA1P49639 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC12.77□□□□□ -0.37
HOXA1P49639 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
HOXA1P49639 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC12.77□□□□□ -0.37
HOXA1P49639 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC12.77□□□□□ -0.37
HOXA1P49639 AC079776.4-201ENST00000511039 504 ntBASIC12.77□□□□□ -0.37
HOXA1P49639 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC12.77□□□□□ -0.37
HOXA1P49639 KRT19P2-202ENST00000557173 1012 ntBASIC12.77□□□□□ -0.37
HOXA1P49639 AC018845.2-201ENST00000568326 409 ntBASIC12.77□□□□□ -0.37
HOXA1P49639 PTPRS-204ENST00000587303 6353 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
HOXA1P49639 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
HOXA1P49639 Z83851.2-201ENST00000609564 659 ntBASIC12.77□□□□□ -0.37
HOXA1P49639 GOLGA2P9-201ENST00000596977 1937 ntBASIC12.77□□□□□ -0.37
HOXA1P49639 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC12.77□□□□□ -0.37
HOXA1P49639 USP49-203ENST00000394253 9034 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.37
HOXA1P49639 SLC25A29-208ENST00000554912 5169 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
HOXA1P49639 ADGRL1-201ENST00000340736 7853 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
HOXA1P49639 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC12.77□□□□□ -0.37
HOXA1P49639 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC12.77□□□□□ -0.37
HOXA1P49639 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC12.77□□□□□ -0.37
HOXA1P49639 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
HOXA1P49639 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC12.77□□□□□ -0.37
HOXA1P49639 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC12.77□□□□□ -0.37
HOXA1P49639 ZBED6CL-201ENST00000343855 2933 ntAPPRIS P1 BASIC12.77□□□□□ -0.37
HOXA1P49639 SELPLG-203ENST00000550948 2256 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.37
HOXA1P49639 CMBL-201ENST00000296658 2335 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Retrieved 100 of 98,524 protein–RNA pairs in 44.2 ms