Protein–RNA interactions for Protein: P43699

NKX2-1, Homeobox protein Nkx-2.1, humanhuman

Predicted RBP Predictions only

Length 371 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-1P43699 CA12-201ENST00000178638 6413 ntAPPRIS P4 TSL 1 (best) BASIC12.58□□□□□ -0.4
NKX2-1P43699 WDR17-205ENST00000508596 4294 ntAPPRIS ALT1 TSL 1 (best) BASIC12.58□□□□□ -0.4
NKX2-1P43699 FAM107A-206ENST00000474531 2271 ntTSL 2 BASIC12.58□□□□□ -0.4
NKX2-1P43699 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC12.58□□□□□ -0.4
NKX2-1P43699 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC12.58□□□□□ -0.4
NKX2-1P43699 AIFM1-209ENST00000535724 2468 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
NKX2-1P43699 SF1-209ENST00000433274 2317 ntTSL 2 BASIC12.57□□□□□ -0.4
NKX2-1P43699 LINC01250-201ENST00000457478 2344 ntTSL 2 BASIC12.57□□□□□ -0.4
NKX2-1P43699 DDX3X-201ENST00000399959 5399 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
NKX2-1P43699 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
NKX2-1P43699 GUF1-201ENST00000281543 4449 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
NKX2-1P43699 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC12.57□□□□□ -0.4
NKX2-1P43699 GNB1L-201ENST00000329517 6706 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
NKX2-1P43699 ADPRHL1-201ENST00000356501 1877 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
NKX2-1P43699 SYNGAP1-203ENST00000428982 4339 ntTSL 5 BASIC12.57□□□□□ -0.4
NKX2-1P43699 SWAP70-201ENST00000318950 4882 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
NKX2-1P43699 CUL1-201ENST00000325222 3064 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
NKX2-1P43699 FASN-206ENST00000634990 8407 ntAPPRIS ALT1 TSL 5 BASIC12.57□□□□□ -0.4
NKX2-1P43699 EIF5-202ENST00000392715 3417 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
NKX2-1P43699 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
NKX2-1P43699 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
NKX2-1P43699 FBXL19-201ENST00000338343 3965 ntAPPRIS ALT2 TSL 5 BASIC12.57□□□□□ -0.4
NKX2-1P43699 EPHA2-201ENST00000358432 3964 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
NKX2-1P43699 ERLIN2-205ENST00000518586 2623 ntTSL 2 BASIC12.57□□□□□ -0.4
NKX2-1P43699 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
NKX2-1P43699 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC12.57□□□□□ -0.4
NKX2-1P43699 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC12.57□□□□□ -0.4
NKX2-1P43699 FAM220BP-201ENST00000377689 816 ntBASIC12.57□□□□□ -0.4
NKX2-1P43699 FES-203ENST00000394302 2133 ntTSL 5 BASIC12.57□□□□□ -0.4
NKX2-1P43699 CBR1-202ENST00000399191 838 ntTSL 3 BASIC12.57□□□□□ -0.4
NKX2-1P43699 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC12.57□□□□□ -0.4
NKX2-1P43699 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
NKX2-1P43699 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC12.57□□□□□ -0.4
NKX2-1P43699 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC12.57□□□□□ -0.4
NKX2-1P43699 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC12.57□□□□□ -0.4
NKX2-1P43699 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC12.57□□□□□ -0.4
NKX2-1P43699 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC12.57□□□□□ -0.4
NKX2-1P43699 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC12.57□□□□□ -0.4
NKX2-1P43699 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC12.57□□□□□ -0.4
NKX2-1P43699 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC12.57□□□□□ -0.4
NKX2-1P43699 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC12.57□□□□□ -0.4
NKX2-1P43699 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
NKX2-1P43699 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC12.57□□□□□ -0.4
NKX2-1P43699 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC12.57□□□□□ -0.4
NKX2-1P43699 AC148477.8-201ENST00000624298 468 ntBASIC12.57□□□□□ -0.4
NKX2-1P43699 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
NKX2-1P43699 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
NKX2-1P43699 AC005899.8-201ENST00000625127 3153 ntTSL 5 BASIC12.57□□□□□ -0.4
NKX2-1P43699 ZNF576-203ENST00000525771 2327 ntAPPRIS P1 TSL 2 BASIC12.57□□□□□ -0.4
NKX2-1P43699 LONP1-202ENST00000540670 3002 ntTSL 2 BASIC12.57□□□□□ -0.4
NKX2-1P43699 AC012508.2-201ENST00000567613 1472 ntBASIC12.57□□□□□ -0.4
NKX2-1P43699 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC12.57□□□□□ -0.4
NKX2-1P43699 CRACR2A-201ENST00000252322 2186 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
NKX2-1P43699 ENO2-211ENST00000541477 2549 ntAPPRIS P1 TSL 2 BASIC12.57□□□□□ -0.4
NKX2-1P43699 KLHL25-201ENST00000337975 3758 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
NKX2-1P43699 RBPJ-206ENST00000361572 1697 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
NKX2-1P43699 BCAR1-209ENST00000546196 1340 ntBASIC12.57□□□□□ -0.4
NKX2-1P43699 PHTF1-204ENST00000369604 3273 ntAPPRIS P1 TSL 5 BASIC12.57□□□□□ -0.4
NKX2-1P43699 SPOCK3-210ENST00000506886 2947 ntAPPRIS ALT2 TSL 5 BASIC12.57□□□□□ -0.4
NKX2-1P43699 ATCAY-201ENST00000450849 5070 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
NKX2-1P43699 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
NKX2-1P43699 ZNF541-202ENST00000314121 4631 ntAPPRIS ALT2 TSL 5 BASIC12.57□□□□□ -0.4
NKX2-1P43699 MLXIPL-205ENST00000429400 3173 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
NKX2-1P43699 TPD52L2-206ENST00000358548 2275 ntTSL 2 BASIC12.57□□□□□ -0.4
NKX2-1P43699 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC12.57□□□□□ -0.4
NKX2-1P43699 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC12.56□□□□□ -0.4
NKX2-1P43699 ZFP36L1-201ENST00000336440 3026 ntAPPRIS P1 TSL 2 BASIC12.56□□□□□ -0.4
NKX2-1P43699 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC12.56□□□□□ -0.4
NKX2-1P43699 SGK1-205ENST00000413996 2686 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
NKX2-1P43699 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
NKX2-1P43699 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
NKX2-1P43699 BNIP3-201ENST00000368636 2861 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
NKX2-1P43699 HNRNPH3-201ENST00000265866 2339 ntAPPRIS P4 TSL 1 (best) BASIC12.56□□□□□ -0.4
NKX2-1P43699 PELP1-212ENST00000574876 3465 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
NKX2-1P43699 ESS2-201ENST00000252137 5392 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
NKX2-1P43699 SPOCK3-202ENST00000357545 2936 ntAPPRIS P3 TSL 1 (best) BASIC12.56□□□□□ -0.4
NKX2-1P43699 PLXNB2-201ENST00000359337 6335 ntAPPRIS P1 TSL 5 BASIC12.56□□□□□ -0.4
NKX2-1P43699 GALNT3-201ENST00000392701 3868 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
NKX2-1P43699 SYN2-205ENST00000620175 3871 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
NKX2-1P43699 SUOX-201ENST00000266971 2364 ntAPPRIS P1 TSL 2 BASIC12.56□□□□□ -0.4
NKX2-1P43699 UGT3A2-201ENST00000282507 2355 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
NKX2-1P43699 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
NKX2-1P43699 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC12.56□□□□□ -0.4
NKX2-1P43699 ISY1-RAB43-201ENST00000418265 4868 ntAPPRIS P1 TSL 2 BASIC12.56□□□□□ -0.4
NKX2-1P43699 DENND3-211ENST00000519811 5482 ntAPPRIS ALT2 TSL 5 BASIC12.56□□□□□ -0.4
NKX2-1P43699 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC12.56□□□□□ -0.4
NKX2-1P43699 OSBPL8-203ENST00000393250 3157 ntAPPRIS ALT1 TSL 5 BASIC12.56□□□□□ -0.4
NKX2-1P43699 CLEC16A-202ENST00000409552 3365 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
NKX2-1P43699 ADAM15-206ENST00000368412 2804 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
NKX2-1P43699 SATB2-211ENST00000614512 4972 ntTSL 5 BASIC12.56□□□□□ -0.4
NKX2-1P43699 SETD6-203ENST00000394266 3423 ntTSL 5 BASIC12.56□□□□□ -0.4
NKX2-1P43699 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC12.56□□□□□ -0.4
NKX2-1P43699 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC12.56□□□□□ -0.4
NKX2-1P43699 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
NKX2-1P43699 AC002056.1-201ENST00000395613 760 ntBASIC12.56□□□□□ -0.4
NKX2-1P43699 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
NKX2-1P43699 AC009947.1-201ENST00000444350 727 ntBASIC12.56□□□□□ -0.4
NKX2-1P43699 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC12.56□□□□□ -0.4
NKX2-1P43699 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
NKX2-1P43699 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC12.56□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 36.1 ms