Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 AL450469.2-201ENST00000427132 499 ntTSL 3 BASIC15.56■□□□□ 0.08
COL9A1P20849 SOX9-AS1-207ENST00000446332 443 ntTSL 2 BASIC15.56■□□□□ 0.08
COL9A1P20849 AC010900.1-201ENST00000449849 1296 ntBASIC15.56■□□□□ 0.08
COL9A1P20849 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC15.56■□□□□ 0.08
COL9A1P20849 HFE-209ENST00000461397 1045 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
COL9A1P20849 PRPS2-205ENST00000489404 763 ntTSL 2 BASIC15.56■□□□□ 0.08
COL9A1P20849 SNCB-203ENST00000506696 552 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
COL9A1P20849 AC087620.1-201ENST00000520037 447 ntTSL 3 BASIC15.56■□□□□ 0.08
COL9A1P20849 AC113192.2-201ENST00000525320 308 ntTSL 3 BASIC15.56■□□□□ 0.08
COL9A1P20849 AC078880.1-201ENST00000546696 553 ntTSL 4 BASIC15.56■□□□□ 0.08
COL9A1P20849 MAP1LC3B2-202ENST00000556529 660 ntAPPRIS P1 TSL 3 BASIC15.56■□□□□ 0.08
COL9A1P20849 CDIP1-202ENST00000562334 1205 ntTSL 2 BASIC15.56■□□□□ 0.08
COL9A1P20849 FAM104A-206ENST00000583024 417 ntTSL 3 BASIC15.56■□□□□ 0.08
COL9A1P20849 AP005212.2-201ENST00000584979 510 ntBASIC15.56■□□□□ 0.08
COL9A1P20849 AC009264.1-206ENST00000592183 534 ntTSL 4 BASIC15.56■□□□□ 0.08
COL9A1P20849 AC008147.4-201ENST00000617570 1204 ntBASIC15.56■□□□□ 0.08
COL9A1P20849 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC15.56■□□□□ 0.08
COL9A1P20849 FAM90A7P-201ENST00000382628 1395 ntBASIC15.56■□□□□ 0.08
COL9A1P20849 FAM90A23P-201ENST00000400136 1395 ntBASIC15.56■□□□□ 0.08
COL9A1P20849 AC090515.2-201ENST00000500929 1396 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
COL9A1P20849 FAM90A21P-201ENST00000510875 1396 ntBASIC15.56■□□□□ 0.08
COL9A1P20849 FAM90A15P-201ENST00000514465 1395 ntBASIC15.56■□□□□ 0.08
COL9A1P20849 FAM90A6P-201ENST00000515148 1394 ntBASIC15.56■□□□□ 0.08
COL9A1P20849 FAM90A16P-201ENST00000526662 1395 ntBASIC15.56■□□□□ 0.08
COL9A1P20849 FAM90A9P-201ENST00000527940 1395 ntBASIC15.56■□□□□ 0.08
COL9A1P20849 FAM90A5P-201ENST00000528738 1395 ntBASIC15.56■□□□□ 0.08
COL9A1P20849 FAM90A14P-201ENST00000530386 1395 ntBASIC15.56■□□□□ 0.08
COL9A1P20849 FAM90A13P-201ENST00000534703 1395 ntBASIC15.56■□□□□ 0.08
COL9A1P20849 DLX4-202ENST00000411890 1404 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
COL9A1P20849 SCGN-203ENST00000612225 1402 ntTSL 5 BASIC15.56■□□□□ 0.08
COL9A1P20849 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC15.56■□□□□ 0.08
COL9A1P20849 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
COL9A1P20849 SLCO6A1-207ENST00000513675 1611 ntTSL 2 BASIC15.56■□□□□ 0.08
COL9A1P20849 MANEAL-201ENST00000329006 1930 ntTSL 2 BASIC15.56■□□□□ 0.08
COL9A1P20849 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC15.56■□□□□ 0.08
COL9A1P20849 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
COL9A1P20849 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
COL9A1P20849 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC15.56■□□□□ 0.08
COL9A1P20849 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC15.55■□□□□ 0.08
COL9A1P20849 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
COL9A1P20849 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
COL9A1P20849 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
COL9A1P20849 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
COL9A1P20849 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC15.55■□□□□ 0.08
COL9A1P20849 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
COL9A1P20849 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
COL9A1P20849 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC15.55■□□□□ 0.08
COL9A1P20849 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
COL9A1P20849 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
COL9A1P20849 AC004899.1-201ENST00000424687 1714 ntBASIC15.55■□□□□ 0.08
COL9A1P20849 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
COL9A1P20849 UBE3C-202ENST00000389103 1626 ntTSL 5 BASIC15.55■□□□□ 0.08
COL9A1P20849 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC15.55■□□□□ 0.08
COL9A1P20849 CCDC51-204ENST00000442740 1554 ntTSL 3 BASIC15.55■□□□□ 0.08
COL9A1P20849 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC15.55■□□□□ 0.08
COL9A1P20849 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
COL9A1P20849 HIST1H2BJ-201ENST00000339812 381 ntAPPRIS P1 BASIC15.55■□□□□ 0.08
COL9A1P20849 MRPL55-214ENST00000366741 603 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
COL9A1P20849 MRPL55-218ENST00000366747 603 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
COL9A1P20849 CCDC167-201ENST00000373408 619 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
COL9A1P20849 FAM9C-202ENST00000380625 1122 ntAPPRIS P2 TSL 1 (best) BASIC15.55■□□□□ 0.08
COL9A1P20849 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC15.55■□□□□ 0.08
COL9A1P20849 AC114763.1-201ENST00000431985 928 ntTSL 2 BASIC15.55■□□□□ 0.08
COL9A1P20849 LINC00466-203ENST00000436475 1059 ntTSL 5 BASIC15.55■□□□□ 0.08
COL9A1P20849 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC15.55■□□□□ 0.08
COL9A1P20849 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC15.55■□□□□ 0.08
COL9A1P20849 AC006455.8-201ENST00000451381 351 ntTSL 3 BASIC15.55■□□□□ 0.08
COL9A1P20849 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC15.55■□□□□ 0.08
COL9A1P20849 RN7SL67P-201ENST00000492147 296 ntBASIC15.55■□□□□ 0.08
COL9A1P20849 MGAT4D-201ENST00000503109 1281 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
COL9A1P20849 CHCHD2P2-201ENST00000503744 321 ntBASIC15.55■□□□□ 0.08
COL9A1P20849 IL32-218ENST00000530890 774 ntAPPRIS ALT2 TSL 2 BASIC15.55■□□□□ 0.08
COL9A1P20849 FAM86B1-218ENST00000534520 808 ntTSL 2 BASIC15.55■□□□□ 0.08
COL9A1P20849 ERVK13-1-204ENST00000566343 567 ntTSL 4 BASIC15.55■□□□□ 0.08
COL9A1P20849 RN7SL48P-201ENST00000579283 293 ntBASIC15.55■□□□□ 0.08
COL9A1P20849 AC055811.3-201ENST00000584952 686 ntBASIC15.55■□□□□ 0.08
COL9A1P20849 FBXL12-202ENST00000585379 956 ntTSL 2 BASIC15.55■□□□□ 0.08
COL9A1P20849 SLC35G4-201ENST00000588001 1017 ntAPPRIS P1 BASIC15.55■□□□□ 0.08
COL9A1P20849 TMIGD2-204ENST00000600349 333 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
COL9A1P20849 AC006548.2-201ENST00000605217 529 ntBASIC15.55■□□□□ 0.08
COL9A1P20849 AC005632.3-201ENST00000605544 308 ntBASIC15.55■□□□□ 0.08
COL9A1P20849 LINC02018-201ENST00000608169 1268 ntTSL 4 BASIC15.55■□□□□ 0.08
COL9A1P20849 AL136295.7-201ENST00000619226 1200 ntBASIC15.55■□□□□ 0.08
COL9A1P20849 AC138466.5-201ENST00000624002 808 ntBASIC15.55■□□□□ 0.08
COL9A1P20849 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC15.55■□□□□ 0.08
COL9A1P20849 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
COL9A1P20849 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC15.55■□□□□ 0.08
COL9A1P20849 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
COL9A1P20849 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC15.55■□□□□ 0.08
COL9A1P20849 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC15.55■□□□□ 0.08
COL9A1P20849 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
COL9A1P20849 TKT-202ENST00000423516 2075 ntTSL 2 BASIC15.55■□□□□ 0.08
COL9A1P20849 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC15.55■□□□□ 0.08
COL9A1P20849 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
COL9A1P20849 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC15.54■□□□□ 0.08
COL9A1P20849 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
COL9A1P20849 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
COL9A1P20849 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
COL9A1P20849 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
COL9A1P20849 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 64.2 ms