Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC13.84□□□□□ -0.19
HIF3AQ9Y2N7 CRYBG1-204ENST00000633556 9909 ntAPPRIS ALT2 TSL 5 BASIC13.84□□□□□ -0.19
HIF3AQ9Y2N7 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC13.84□□□□□ -0.19
HIF3AQ9Y2N7 ZNF485-201ENST00000361807 2054 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
HIF3AQ9Y2N7 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
HIF3AQ9Y2N7 NPFFR1-201ENST00000277942 8921 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
HIF3AQ9Y2N7 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
HIF3AQ9Y2N7 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC13.84□□□□□ -0.19
HIF3AQ9Y2N7 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
HIF3AQ9Y2N7 GPD1L-201ENST00000282541 4060 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
HIF3AQ9Y2N7 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
HIF3AQ9Y2N7 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC13.84□□□□□ -0.19
HIF3AQ9Y2N7 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC13.84□□□□□ -0.19
HIF3AQ9Y2N7 SMAD2-202ENST00000356825 10445 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
HIF3AQ9Y2N7 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
HIF3AQ9Y2N7 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC13.84□□□□□ -0.19
HIF3AQ9Y2N7 CICP14-201ENST00000629111 2732 ntBASIC13.84□□□□□ -0.19
HIF3AQ9Y2N7 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC13.84□□□□□ -0.19
HIF3AQ9Y2N7 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
HIF3AQ9Y2N7 VMA21-202ENST00000370361 693 ntTSL 5 BASIC13.84□□□□□ -0.19
HIF3AQ9Y2N7 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC13.84□□□□□ -0.19
HIF3AQ9Y2N7 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC13.84□□□□□ -0.19
HIF3AQ9Y2N7 STK33P1-201ENST00000423835 1218 ntBASIC13.84□□□□□ -0.19
HIF3AQ9Y2N7 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC13.84□□□□□ -0.19
HIF3AQ9Y2N7 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC13.84□□□□□ -0.19
HIF3AQ9Y2N7 MEIS3P1-201ENST00000495167 958 ntBASIC13.84□□□□□ -0.19
HIF3AQ9Y2N7 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC13.84□□□□□ -0.19
HIF3AQ9Y2N7 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC13.84□□□□□ -0.19
HIF3AQ9Y2N7 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC13.84□□□□□ -0.19
HIF3AQ9Y2N7 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC13.84□□□□□ -0.19
HIF3AQ9Y2N7 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC13.84□□□□□ -0.19
HIF3AQ9Y2N7 AL391069.4-201ENST00000609583 481 ntBASIC13.84□□□□□ -0.19
HIF3AQ9Y2N7 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
HIF3AQ9Y2N7 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
HIF3AQ9Y2N7 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
HIF3AQ9Y2N7 CCDC88A-201ENST00000263630 9667 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
HIF3AQ9Y2N7 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC13.84□□□□□ -0.19
HIF3AQ9Y2N7 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
HIF3AQ9Y2N7 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
HIF3AQ9Y2N7 SCUBE1-202ENST00000360835 9808 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
HIF3AQ9Y2N7 CSPG4P12-202ENST00000559989 7790 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
HIF3AQ9Y2N7 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
HIF3AQ9Y2N7 PDE4D-203ENST00000340635 8232 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
HIF3AQ9Y2N7 PCDHB14-201ENST00000239449 4828 ntAPPRIS P1 BASIC13.84□□□□□ -0.19
HIF3AQ9Y2N7 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC13.84□□□□□ -0.19
HIF3AQ9Y2N7 LINC00552-201ENST00000625151 2579 ntBASIC13.83□□□□□ -0.19
HIF3AQ9Y2N7 RNF8-202ENST00000373479 5631 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
HIF3AQ9Y2N7 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC13.83□□□□□ -0.19
HIF3AQ9Y2N7 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC13.83□□□□□ -0.2
HIF3AQ9Y2N7 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC13.83□□□□□ -0.2
HIF3AQ9Y2N7 FAM46C-201ENST00000369448 5751 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
HIF3AQ9Y2N7 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
HIF3AQ9Y2N7 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
HIF3AQ9Y2N7 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC13.83□□□□□ -0.2
HIF3AQ9Y2N7 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC13.83□□□□□ -0.2
HIF3AQ9Y2N7 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
HIF3AQ9Y2N7 SLC25A27-201ENST00000371347 2963 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
HIF3AQ9Y2N7 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
HIF3AQ9Y2N7 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC13.83□□□□□ -0.2
HIF3AQ9Y2N7 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC13.83□□□□□ -0.2
HIF3AQ9Y2N7 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC13.83□□□□□ -0.2
HIF3AQ9Y2N7 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC13.83□□□□□ -0.2
HIF3AQ9Y2N7 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC13.83□□□□□ -0.2
HIF3AQ9Y2N7 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC13.83□□□□□ -0.2
HIF3AQ9Y2N7 IGHV3-42-201ENST00000520410 361 ntBASIC13.83□□□□□ -0.2
HIF3AQ9Y2N7 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
HIF3AQ9Y2N7 AC009407.1-201ENST00000568958 598 ntBASIC13.83□□□□□ -0.2
HIF3AQ9Y2N7 PRR29-204ENST00000577953 565 ntTSL 4 BASIC13.83□□□□□ -0.2
HIF3AQ9Y2N7 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC13.83□□□□□ -0.2
HIF3AQ9Y2N7 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC13.83□□□□□ -0.2
HIF3AQ9Y2N7 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
HIF3AQ9Y2N7 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
HIF3AQ9Y2N7 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC13.83□□□□□ -0.2
HIF3AQ9Y2N7 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
HIF3AQ9Y2N7 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC13.83□□□□□ -0.2
HIF3AQ9Y2N7 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
HIF3AQ9Y2N7 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC13.83□□□□□ -0.2
HIF3AQ9Y2N7 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
HIF3AQ9Y2N7 KRT18P28-201ENST00000453838 1332 ntBASIC13.83□□□□□ -0.2
HIF3AQ9Y2N7 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
HIF3AQ9Y2N7 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
HIF3AQ9Y2N7 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC13.83□□□□□ -0.2
HIF3AQ9Y2N7 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
HIF3AQ9Y2N7 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
HIF3AQ9Y2N7 AC007787.1-201ENST00000588095 1583 ntBASIC13.83□□□□□ -0.2
HIF3AQ9Y2N7 ZNF18-201ENST00000322748 2767 ntAPPRIS P3 TSL 2 BASIC13.83□□□□□ -0.2
HIF3AQ9Y2N7 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC13.82□□□□□ -0.2
HIF3AQ9Y2N7 ZNF800-201ENST00000265827 4203 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
HIF3AQ9Y2N7 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC13.82□□□□□ -0.2
HIF3AQ9Y2N7 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
HIF3AQ9Y2N7 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC13.82□□□□□ -0.2
HIF3AQ9Y2N7 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
HIF3AQ9Y2N7 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
HIF3AQ9Y2N7 ANKRD50-202ENST00000515641 4212 ntTSL 2 BASIC13.82□□□□□ -0.2
HIF3AQ9Y2N7 COQ8A-203ENST00000366779 5523 ntAPPRIS P1 TSL 2 BASIC13.82□□□□□ -0.2
HIF3AQ9Y2N7 CRYBG2-210ENST00000527815 2523 ntAPPRIS ALT2 TSL 2 BASIC13.82□□□□□ -0.2
HIF3AQ9Y2N7 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
HIF3AQ9Y2N7 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
HIF3AQ9Y2N7 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC13.82□□□□□ -0.2
HIF3AQ9Y2N7 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC13.82□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 59.5 ms