Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 AC005912.2-201ENST00000619492 2400 ntBASIC12.41□□□□□ -0.42
FOXA2Q9Y261 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC12.41□□□□□ -0.42
FOXA2Q9Y261 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
FOXA2Q9Y261 TMEM201-202ENST00000340381 3776 ntAPPRIS P1 TSL 5 BASIC12.41□□□□□ -0.42
FOXA2Q9Y261 MYH6-202ENST00000405093 5941 ntAPPRIS P1 TSL 5 BASIC12.41□□□□□ -0.42
FOXA2Q9Y261 KCNMA1-202ENST00000286628 6233 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
FOXA2Q9Y261 RGS9-202ENST00000443584 2078 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
FOXA2Q9Y261 DEGS2-201ENST00000305631 4352 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
FOXA2Q9Y261 COCH-203ENST00000460581 2688 ntTSL 2 BASIC12.41□□□□□ -0.42
FOXA2Q9Y261 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
FOXA2Q9Y261 MEIOC-201ENST00000409122 4604 ntAPPRIS P2 TSL 5 BASIC12.41□□□□□ -0.42
FOXA2Q9Y261 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
FOXA2Q9Y261 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC12.41□□□□□ -0.42
FOXA2Q9Y261 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
FOXA2Q9Y261 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC12.41□□□□□ -0.42
FOXA2Q9Y261 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
FOXA2Q9Y261 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
FOXA2Q9Y261 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC12.41□□□□□ -0.42
FOXA2Q9Y261 ZBTB17-201ENST00000375733 2770 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
FOXA2Q9Y261 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
FOXA2Q9Y261 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
FOXA2Q9Y261 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC12.41□□□□□ -0.42
FOXA2Q9Y261 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC12.41□□□□□ -0.42
FOXA2Q9Y261 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC12.41□□□□□ -0.42
FOXA2Q9Y261 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
FOXA2Q9Y261 AC044860.1-202ENST00000559481 777 ntBASIC12.41□□□□□ -0.42
FOXA2Q9Y261 PRR29-204ENST00000577953 565 ntTSL 4 BASIC12.41□□□□□ -0.42
FOXA2Q9Y261 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC12.41□□□□□ -0.42
FOXA2Q9Y261 TBCB-211ENST00000589996 724 ntTSL 3 BASIC12.41□□□□□ -0.42
FOXA2Q9Y261 5S_rRNA.22-201ENST00000614916 106 ntBASIC12.41□□□□□ -0.42
FOXA2Q9Y261 AJ011932.1-201ENST00000621707 465 ntBASIC12.41□□□□□ -0.42
FOXA2Q9Y261 RTEL1-201ENST00000318100 4676 ntTSL 2 BASIC12.41□□□□□ -0.42
FOXA2Q9Y261 SLC24A3-201ENST00000328041 3929 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
FOXA2Q9Y261 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC12.41□□□□□ -0.42
FOXA2Q9Y261 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC12.41□□□□□ -0.42
FOXA2Q9Y261 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
FOXA2Q9Y261 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC12.41□□□□□ -0.42
FOXA2Q9Y261 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
FOXA2Q9Y261 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
FOXA2Q9Y261 E2F6-202ENST00000381525 3218 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
FOXA2Q9Y261 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC12.41□□□□□ -0.42
FOXA2Q9Y261 SNX30-201ENST00000374232 7622 ntAPPRIS P1 TSL 5 BASIC12.41□□□□□ -0.42
FOXA2Q9Y261 KIF26B-202ENST00000407071 7287 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
FOXA2Q9Y261 AC140479.7-201ENST00000636301 2332 ntBASIC12.4□□□□□ -0.42
FOXA2Q9Y261 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC12.4□□□□□ -0.42
FOXA2Q9Y261 PDPK1-202ENST00000342085 7241 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
FOXA2Q9Y261 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC12.4□□□□□ -0.42
FOXA2Q9Y261 TMEM200C-202ENST00000581347 10638 ntAPPRIS P1 TSL 5 BASIC12.4□□□□□ -0.42
FOXA2Q9Y261 KIAA1191-201ENST00000298569 2991 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
FOXA2Q9Y261 MGRN1-202ENST00000399577 6425 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.42
FOXA2Q9Y261 MLST8-201ENST00000301724 1735 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
FOXA2Q9Y261 YTHDC1-202ENST00000355665 3244 ntAPPRIS P3 TSL 1 (best) BASIC12.4□□□□□ -0.42
FOXA2Q9Y261 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC12.4□□□□□ -0.42
FOXA2Q9Y261 PBX3-203ENST00000373487 2902 ntTSL 5 BASIC12.4□□□□□ -0.42
FOXA2Q9Y261 SNAP91-213ENST00000521485 4521 ntAPPRIS ALT2 TSL 5 BASIC12.4□□□□□ -0.42
FOXA2Q9Y261 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
FOXA2Q9Y261 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
FOXA2Q9Y261 AC104457.1-201ENST00000401024 814 ntBASIC12.4□□□□□ -0.42
FOXA2Q9Y261 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC12.4□□□□□ -0.42
FOXA2Q9Y261 AC015922.1-201ENST00000421102 1152 ntBASIC12.4□□□□□ -0.42
FOXA2Q9Y261 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC12.4□□□□□ -0.42
FOXA2Q9Y261 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC12.4□□□□□ -0.42
FOXA2Q9Y261 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC12.4□□□□□ -0.42
FOXA2Q9Y261 AC135586.1-201ENST00000539323 574 ntBASIC12.4□□□□□ -0.42
FOXA2Q9Y261 TIMM17BP1-201ENST00000545713 516 ntBASIC12.4□□□□□ -0.42
FOXA2Q9Y261 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC12.4□□□□□ -0.42
FOXA2Q9Y261 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC12.4□□□□□ -0.42
FOXA2Q9Y261 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
FOXA2Q9Y261 GGT1-201ENST00000248923 2326 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
FOXA2Q9Y261 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC12.4□□□□□ -0.42
FOXA2Q9Y261 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC12.4□□□□□ -0.42
FOXA2Q9Y261 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
FOXA2Q9Y261 FAM110C-201ENST00000327669 3760 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
FOXA2Q9Y261 TP53INP2-201ENST00000374809 4018 ntAPPRIS P1 TSL 5 BASIC12.4□□□□□ -0.42
FOXA2Q9Y261 PDE1B-207ENST00000550620 2150 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
FOXA2Q9Y261 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC12.4□□□□□ -0.42
FOXA2Q9Y261 USP47-207ENST00000527733 4525 ntAPPRIS P3 TSL 1 (best) BASIC12.4□□□□□ -0.42
FOXA2Q9Y261 AC007686.3-201ENST00000619017 3487 ntBASIC12.4□□□□□ -0.42
FOXA2Q9Y261 PTK7-210ENST00000471863 2412 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
FOXA2Q9Y261 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
FOXA2Q9Y261 TRAF7-201ENST00000326181 3700 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
FOXA2Q9Y261 SALL3-201ENST00000536229 3997 ntTSL 3 BASIC12.4□□□□□ -0.42
FOXA2Q9Y261 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
FOXA2Q9Y261 LINC02395-201ENST00000546821 3157 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
FOXA2Q9Y261 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC12.4□□□□□ -0.42
FOXA2Q9Y261 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC12.4□□□□□ -0.43
FOXA2Q9Y261 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC12.4□□□□□ -0.43
FOXA2Q9Y261 ZBTB45P1-201ENST00000452761 1456 ntBASIC12.4□□□□□ -0.43
FOXA2Q9Y261 SCYL1-201ENST00000270176 2642 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.43
FOXA2Q9Y261 TNFSF13-201ENST00000338784 1971 ntAPPRIS P3 TSL 1 (best) BASIC12.39□□□□□ -0.43
FOXA2Q9Y261 EOMES-201ENST00000295743 3386 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
FOXA2Q9Y261 ST3GAL3-208ENST00000361392 2243 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
FOXA2Q9Y261 PIK3IP1-201ENST00000215912 2467 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
FOXA2Q9Y261 AL669918.1-201ENST00000452392 2705 ntAPPRIS P1 TSL 2 BASIC12.39□□□□□ -0.43
FOXA2Q9Y261 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
FOXA2Q9Y261 DLX6-202ENST00000518156 2304 ntAPPRIS P2 TSL 1 (best) BASIC12.39□□□□□ -0.43
FOXA2Q9Y261 PCDHGB1-202ENST00000611598 2592 ntAPPRIS ALT2 BASIC12.39□□□□□ -0.43
FOXA2Q9Y261 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC12.39□□□□□ -0.43
FOXA2Q9Y261 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
FOXA2Q9Y261 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms