Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 ABCC1-201ENST00000399408 6594 ntTSL 5 BASIC15.88■□□□□ 0.13
AP4E1Q9UPM8 ABCC1-202ENST00000399410 6552 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
AP4E1Q9UPM8 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
AP4E1Q9UPM8 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
AP4E1Q9UPM8 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
AP4E1Q9UPM8 DDX55-201ENST00000238146 2654 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
AP4E1Q9UPM8 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC15.88■□□□□ 0.13
AP4E1Q9UPM8 ESPNL-201ENST00000343063 4836 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
AP4E1Q9UPM8 SPON1-201ENST00000576479 4837 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
AP4E1Q9UPM8 TNXB-209ENST00000613214 6842 ntTSL 5 BASIC15.88■□□□□ 0.13
AP4E1Q9UPM8 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
AP4E1Q9UPM8 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC15.87■□□□□ 0.13
AP4E1Q9UPM8 ZFPM2-206ENST00000520492 3960 ntTSL 2 BASIC15.87■□□□□ 0.13
AP4E1Q9UPM8 NANOS1-202ENST00000425699 4017 ntAPPRIS P2 BASIC15.87■□□□□ 0.13
AP4E1Q9UPM8 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC15.87■□□□□ 0.13
AP4E1Q9UPM8 ZBTB7C-204ENST00000586438 4899 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
AP4E1Q9UPM8 ITSN1-204ENST00000381285 6107 ntTSL 5 BASIC15.87■□□□□ 0.13
AP4E1Q9UPM8 OGFRL1-201ENST00000370435 8391 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
AP4E1Q9UPM8 DZIP1-204ENST00000376829 3738 ntAPPRIS P4 TSL 1 (best) BASIC15.87■□□□□ 0.13
AP4E1Q9UPM8 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
AP4E1Q9UPM8 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
AP4E1Q9UPM8 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC15.87■□□□□ 0.13
AP4E1Q9UPM8 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC15.87■□□□□ 0.13
AP4E1Q9UPM8 AL645937.2-201ENST00000396808 931 ntBASIC15.87■□□□□ 0.13
AP4E1Q9UPM8 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC15.87■□□□□ 0.13
AP4E1Q9UPM8 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
AP4E1Q9UPM8 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC15.87■□□□□ 0.13
AP4E1Q9UPM8 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC15.87■□□□□ 0.13
AP4E1Q9UPM8 GLI4-203ENST00000517468 963 ntTSL 5 BASIC15.87■□□□□ 0.13
AP4E1Q9UPM8 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC15.87■□□□□ 0.13
AP4E1Q9UPM8 SPDYE22P-201ENST00000582158 798 ntBASIC15.87■□□□□ 0.13
AP4E1Q9UPM8 CTBP2P3-201ENST00000585629 1255 ntBASIC15.87■□□□□ 0.13
AP4E1Q9UPM8 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC15.87■□□□□ 0.13
AP4E1Q9UPM8 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC15.87■□□□□ 0.13
AP4E1Q9UPM8 AC133539.2-201ENST00000604757 467 ntBASIC15.87■□□□□ 0.13
AP4E1Q9UPM8 BX539320.1-201ENST00000623759 877 ntBASIC15.87■□□□□ 0.13
AP4E1Q9UPM8 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC15.87■□□□□ 0.13
AP4E1Q9UPM8 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
AP4E1Q9UPM8 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC15.87■□□□□ 0.13
AP4E1Q9UPM8 CCDC68-204ENST00000591504 4132 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
AP4E1Q9UPM8 MARK4-202ENST00000300843 5209 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
AP4E1Q9UPM8 TOB2-201ENST00000327492 4561 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
AP4E1Q9UPM8 SRPK1-204ENST00000373825 4592 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
AP4E1Q9UPM8 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC15.87■□□□□ 0.13
AP4E1Q9UPM8 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC15.87■□□□□ 0.13
AP4E1Q9UPM8 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
AP4E1Q9UPM8 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
AP4E1Q9UPM8 TBPL2-201ENST00000247219 2037 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
AP4E1Q9UPM8 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
AP4E1Q9UPM8 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC15.87■□□□□ 0.13
AP4E1Q9UPM8 AC013726.1-201ENST00000563747 2285 ntBASIC15.87■□□□□ 0.13
AP4E1Q9UPM8 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC15.87■□□□□ 0.13
AP4E1Q9UPM8 LILRP1-201ENST00000444199 1370 ntBASIC15.87■□□□□ 0.13
AP4E1Q9UPM8 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC15.87■□□□□ 0.13
AP4E1Q9UPM8 HNRNPA1P48-201ENST00000562726 1377 ntBASIC15.87■□□□□ 0.13
AP4E1Q9UPM8 REXO1L5P-201ENST00000622260 2098 ntBASIC15.87■□□□□ 0.13
AP4E1Q9UPM8 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC15.86■□□□□ 0.13
AP4E1Q9UPM8 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
AP4E1Q9UPM8 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
AP4E1Q9UPM8 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
AP4E1Q9UPM8 ATRNL1-201ENST00000355044 8479 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
AP4E1Q9UPM8 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC15.86■□□□□ 0.13
AP4E1Q9UPM8 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
AP4E1Q9UPM8 FGD5P1-202ENST00000614866 2498 ntBASIC15.86■□□□□ 0.13
AP4E1Q9UPM8 APP-208ENST00000439274 2517 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
AP4E1Q9UPM8 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
AP4E1Q9UPM8 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC15.86■□□□□ 0.13
AP4E1Q9UPM8 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC15.86■□□□□ 0.13
AP4E1Q9UPM8 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
AP4E1Q9UPM8 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
AP4E1Q9UPM8 AP001582.1-201ENST00000525856 295 ntBASIC15.86■□□□□ 0.13
AP4E1Q9UPM8 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC15.86■□□□□ 0.13
AP4E1Q9UPM8 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
AP4E1Q9UPM8 AC092364.2-202ENST00000597012 1073 ntBASIC15.86■□□□□ 0.13
AP4E1Q9UPM8 MAP3K4-202ENST00000366919 5397 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
AP4E1Q9UPM8 VEZF1-202ENST00000581208 2321 ntAPPRIS P3 TSL 1 (best) BASIC15.86■□□□□ 0.13
AP4E1Q9UPM8 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
AP4E1Q9UPM8 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
AP4E1Q9UPM8 JRK-210ENST00000614134 8932 ntAPPRIS P4 TSL 1 (best) BASIC15.86■□□□□ 0.13
AP4E1Q9UPM8 LINC01101-201ENST00000622953 1884 ntBASIC15.86■□□□□ 0.13
AP4E1Q9UPM8 AIFM2-201ENST00000307864 3243 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
AP4E1Q9UPM8 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
AP4E1Q9UPM8 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
AP4E1Q9UPM8 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
AP4E1Q9UPM8 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC15.86■□□□□ 0.13
AP4E1Q9UPM8 KCNG4-202ENST00000568181 2199 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
AP4E1Q9UPM8 FMNL1-206ENST00000587489 2487 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
AP4E1Q9UPM8 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
AP4E1Q9UPM8 PTPN21-201ENST00000328736 6089 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
AP4E1Q9UPM8 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
AP4E1Q9UPM8 ANKRD50-202ENST00000515641 4212 ntTSL 2 BASIC15.86■□□□□ 0.13
AP4E1Q9UPM8 PDP1-201ENST00000297598 4272 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
AP4E1Q9UPM8 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
AP4E1Q9UPM8 PCDHA4-203ENST00000530339 5251 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
AP4E1Q9UPM8 AP1S3-206ENST00000443700 1785 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
AP4E1Q9UPM8 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC15.85■□□□□ 0.13
AP4E1Q9UPM8 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC15.85■□□□□ 0.13
AP4E1Q9UPM8 ABHD16A-201ENST00000395952 2103 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
AP4E1Q9UPM8 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
AP4E1Q9UPM8 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 73.4 ms