Protein–RNA interactions for Protein: Q9P218

COL20A1, Collagen alpha-1(XX) chain, humanhuman

Predictions only

Length 1,284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL20A1Q9P218 AC004898.1-201ENST00000451057 766 ntBASIC17.11■□□□□ 0.33
COL20A1Q9P218 AKIP1-210ENST00000534147 1022 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL20A1Q9P218 AC046168.2-201ENST00000560590 875 ntTSL 3 BASIC17.11■□□□□ 0.33
COL20A1Q9P218 TUBB8-202ENST00000562809 820 ntTSL 5 BASIC17.11■□□□□ 0.33
COL20A1Q9P218 DHRS7C-202ENST00000571134 984 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL20A1Q9P218 FXYD6-217ENST00000584394 669 ntTSL 3 BASIC17.11■□□□□ 0.33
COL20A1Q9P218 AL138725.1-201ENST00000407347 1314 ntBASIC17.11■□□□□ 0.33
COL20A1Q9P218 ECSIT-209ENST00000591104 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL20A1Q9P218 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
COL20A1Q9P218 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
COL20A1Q9P218 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC17.11■□□□□ 0.33
COL20A1Q9P218 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL20A1Q9P218 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL20A1Q9P218 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL20A1Q9P218 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL20A1Q9P218 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL20A1Q9P218 LETMD1-206ENST00000547008 1665 ntTSL 2 BASIC17.1■□□□□ 0.33
COL20A1Q9P218 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC17.1■□□□□ 0.33
COL20A1Q9P218 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
COL20A1Q9P218 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC17.1■□□□□ 0.33
COL20A1Q9P218 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL20A1Q9P218 AC073347.1-201ENST00000421633 2643 ntBASIC17.1■□□□□ 0.33
COL20A1Q9P218 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL20A1Q9P218 C11orf16-201ENST00000326053 1908 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL20A1Q9P218 CICP6-201ENST00000457191 2729 ntBASIC17.1■□□□□ 0.33
COL20A1Q9P218 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL20A1Q9P218 PQBP1-201ENST00000218224 1113 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL20A1Q9P218 PQBP1-202ENST00000247140 664 ntTSL 3 BASIC17.1■□□□□ 0.33
COL20A1Q9P218 CSH1-201ENST00000316193 900 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL20A1Q9P218 CLRN1-203ENST00000328863 738 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
COL20A1Q9P218 CSHL1-203ENST00000346606 659 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
COL20A1Q9P218 CLIC1-206ENST00000375779 1127 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
COL20A1Q9P218 PQBP1-203ENST00000376563 1056 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
COL20A1Q9P218 PQBP1-204ENST00000376566 760 ntTSL 3 BASIC17.1■□□□□ 0.33
COL20A1Q9P218 PSME1-202ENST00000382708 1136 ntTSL 2 BASIC17.1■□□□□ 0.33
COL20A1Q9P218 HNRNPA1P32-201ENST00000396326 963 ntBASIC17.1■□□□□ 0.33
COL20A1Q9P218 PQBP1-205ENST00000396763 965 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
COL20A1Q9P218 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
COL20A1Q9P218 AL354877.1-201ENST00000424412 413 ntBASIC17.1■□□□□ 0.33
COL20A1Q9P218 PQBP1-207ENST00000447146 1020 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL20A1Q9P218 C12orf49-204ENST00000548356 923 ntTSL 2 BASIC17.1■□□□□ 0.33
COL20A1Q9P218 AC025154.1-201ENST00000552806 560 ntTSL 5 BASIC17.1■□□□□ 0.33
COL20A1Q9P218 MAX-211ENST00000555667 574 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
COL20A1Q9P218 AL606495.2-201ENST00000605867 535 ntBASIC17.1■□□□□ 0.33
COL20A1Q9P218 AL451050.2-201ENST00000606967 682 ntBASIC17.1■□□□□ 0.33
COL20A1Q9P218 AL358473.2-201ENST00000610411 556 ntTSL 4 BASIC17.1■□□□□ 0.33
COL20A1Q9P218 Metazoa_SRP.166-201ENST00000612530 253 ntBASIC17.1■□□□□ 0.33
COL20A1Q9P218 SLC35G5-201ENST00000382435 1321 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
COL20A1Q9P218 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
COL20A1Q9P218 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC17.1■□□□□ 0.33
COL20A1Q9P218 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL20A1Q9P218 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
COL20A1Q9P218 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL20A1Q9P218 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL20A1Q9P218 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC17.1■□□□□ 0.33
COL20A1Q9P218 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL20A1Q9P218 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL20A1Q9P218 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL20A1Q9P218 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
COL20A1Q9P218 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL20A1Q9P218 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC17.1■□□□□ 0.33
COL20A1Q9P218 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL20A1Q9P218 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL20A1Q9P218 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
COL20A1Q9P218 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL20A1Q9P218 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL20A1Q9P218 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
COL20A1Q9P218 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC17.09■□□□□ 0.33
COL20A1Q9P218 ZEB1-AS1-208ENST00000607166 2503 ntBASIC17.09■□□□□ 0.33
COL20A1Q9P218 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL20A1Q9P218 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL20A1Q9P218 FZR1-201ENST00000313639 1215 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
COL20A1Q9P218 VSIG2-201ENST00000326621 1148 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL20A1Q9P218 BCYRN1-201ENST00000418539 200 ntBASIC17.09■□□□□ 0.33
COL20A1Q9P218 AL021707.3-201ENST00000418803 527 ntTSL 5 BASIC17.09■□□□□ 0.33
COL20A1Q9P218 TMEM107-203ENST00000431792 455 ntTSL 3 BASIC17.09■□□□□ 0.33
COL20A1Q9P218 AC104596.1-201ENST00000507826 579 ntTSL 4 BASIC17.09■□□□□ 0.33
COL20A1Q9P218 CNGA4-202ENST00000533426 936 ntTSL 2 BASIC17.09■□□□□ 0.33
COL20A1Q9P218 AURKB-202ENST00000534871 1167 ntTSL 2 BASIC17.09■□□□□ 0.33
COL20A1Q9P218 AC007342.4-201ENST00000566383 584 ntTSL 4 BASIC17.09■□□□□ 0.33
COL20A1Q9P218 LINC00621-201ENST00000577004 1177 ntTSL 4 BASIC17.09■□□□□ 0.33
COL20A1Q9P218 AL590644.3-201ENST00000635428 1228 ntTSL 5 BASIC17.09■□□□□ 0.33
COL20A1Q9P218 LINC00327-203ENST00000576696 1308 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
COL20A1Q9P218 FAM180B-201ENST00000538490 1388 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL20A1Q9P218 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL20A1Q9P218 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL20A1Q9P218 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC17.09■□□□□ 0.33
COL20A1Q9P218 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL20A1Q9P218 AL359915.2-205ENST00000418015 1529 ntTSL 2 BASIC17.09■□□□□ 0.33
COL20A1Q9P218 CNBP-208ENST00000504813 1549 ntAPPRIS ALT1 TSL 2 BASIC17.09■□□□□ 0.33
COL20A1Q9P218 TMEM184C-204ENST00000508208 1528 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
COL20A1Q9P218 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
COL20A1Q9P218 PCDHGB8P-201ENST00000502926 1973 ntBASIC17.09■□□□□ 0.33
COL20A1Q9P218 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL20A1Q9P218 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
COL20A1Q9P218 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL20A1Q9P218 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL20A1Q9P218 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
COL20A1Q9P218 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL20A1Q9P218 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC17.09■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 36.9 ms