Protein–RNA interactions for Protein: Q9NTJ3

SMC4, Structural maintenance of chromosomes protein 4, humanhuman

Predictions only

Length 1,288 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4Q9NTJ3 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC19.6■□□□□ 0.73
SMC4Q9NTJ3 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC19.6■□□□□ 0.73
SMC4Q9NTJ3 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC19.6■□□□□ 0.73
SMC4Q9NTJ3 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
SMC4Q9NTJ3 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC19.6■□□□□ 0.73
SMC4Q9NTJ3 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC19.6■□□□□ 0.73
SMC4Q9NTJ3 ZSCAN10-209ENST00000576985 2739 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
SMC4Q9NTJ3 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
SMC4Q9NTJ3 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
SMC4Q9NTJ3 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
SMC4Q9NTJ3 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
SMC4Q9NTJ3 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
SMC4Q9NTJ3 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SMC4Q9NTJ3 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC19.6■□□□□ 0.73
SMC4Q9NTJ3 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC19.6■□□□□ 0.73
SMC4Q9NTJ3 USE1-206ENST00000595101 1776 ntTSL 2 BASIC19.6■□□□□ 0.73
SMC4Q9NTJ3 POM121C-206ENST00000607367 3690 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
SMC4Q9NTJ3 ZFPM2-206ENST00000520492 3960 ntTSL 2 BASIC19.59■□□□□ 0.73
SMC4Q9NTJ3 FGD1-201ENST00000375135 4275 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SMC4Q9NTJ3 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SMC4Q9NTJ3 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SMC4Q9NTJ3 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SMC4Q9NTJ3 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SMC4Q9NTJ3 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SMC4Q9NTJ3 RGPD5-202ENST00000272454 2907 ntTSL 2 BASIC19.59■□□□□ 0.73
SMC4Q9NTJ3 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC19.59■□□□□ 0.73
SMC4Q9NTJ3 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SMC4Q9NTJ3 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC19.59■□□□□ 0.73
SMC4Q9NTJ3 CAPN7-201ENST00000253693 4353 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SMC4Q9NTJ3 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SMC4Q9NTJ3 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC19.59■□□□□ 0.73
SMC4Q9NTJ3 PCDHA10-201ENST00000307360 5254 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SMC4Q9NTJ3 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SMC4Q9NTJ3 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC19.59■□□□□ 0.73
SMC4Q9NTJ3 AL645937.2-201ENST00000396808 931 ntBASIC19.59■□□□□ 0.73
SMC4Q9NTJ3 AL162726.2-201ENST00000438986 1017 ntBASIC19.59■□□□□ 0.73
SMC4Q9NTJ3 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC19.59■□□□□ 0.73
SMC4Q9NTJ3 CLUHP6-201ENST00000580789 941 ntBASIC19.59■□□□□ 0.73
SMC4Q9NTJ3 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC19.59■□□□□ 0.73
SMC4Q9NTJ3 AC025048.6-201ENST00000634326 1161 ntBASIC19.59■□□□□ 0.73
SMC4Q9NTJ3 AL033527.5-201ENST00000641382 801 ntBASIC19.59■□□□□ 0.73
SMC4Q9NTJ3 PRKX-201ENST00000262848 6031 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SMC4Q9NTJ3 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SMC4Q9NTJ3 TAP2-205ENST00000620123 5676 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
SMC4Q9NTJ3 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
SMC4Q9NTJ3 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC19.59■□□□□ 0.73
SMC4Q9NTJ3 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC19.59■□□□□ 0.73
SMC4Q9NTJ3 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC19.59■□□□□ 0.73
SMC4Q9NTJ3 PPM1E-201ENST00000308249 6542 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SMC4Q9NTJ3 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SMC4Q9NTJ3 PRDM1-203ENST00000369096 5164 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SMC4Q9NTJ3 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC19.59■□□□□ 0.73
SMC4Q9NTJ3 NOVA2-201ENST00000263257 7803 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SMC4Q9NTJ3 ELMSAN1-202ENST00000394071 7721 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
SMC4Q9NTJ3 FKBP5-201ENST00000357266 3772 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SMC4Q9NTJ3 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SMC4Q9NTJ3 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SMC4Q9NTJ3 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SMC4Q9NTJ3 PAFAH1B1-202ENST00000397195 5497 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
SMC4Q9NTJ3 MFSD13A-201ENST00000238936 2852 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.73
SMC4Q9NTJ3 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC19.58■□□□□ 0.73
SMC4Q9NTJ3 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC19.58■□□□□ 0.73
SMC4Q9NTJ3 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
SMC4Q9NTJ3 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
SMC4Q9NTJ3 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.73
SMC4Q9NTJ3 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
SMC4Q9NTJ3 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC19.58■□□□□ 0.73
SMC4Q9NTJ3 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.73
SMC4Q9NTJ3 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.73
SMC4Q9NTJ3 MYH14-210ENST00000601313 6896 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.73
SMC4Q9NTJ3 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
SMC4Q9NTJ3 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.72
SMC4Q9NTJ3 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
SMC4Q9NTJ3 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC19.58■□□□□ 0.72
SMC4Q9NTJ3 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
SMC4Q9NTJ3 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC19.58■□□□□ 0.72
SMC4Q9NTJ3 TEX26-AS1-201ENST00000411835 1203 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
SMC4Q9NTJ3 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC19.58■□□□□ 0.72
SMC4Q9NTJ3 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC19.58■□□□□ 0.72
SMC4Q9NTJ3 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC19.58■□□□□ 0.72
SMC4Q9NTJ3 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC19.58■□□□□ 0.72
SMC4Q9NTJ3 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC19.58■□□□□ 0.72
SMC4Q9NTJ3 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC19.58■□□□□ 0.72
SMC4Q9NTJ3 METTL26-214ENST00000614890 801 ntTSL 3 BASIC19.58■□□□□ 0.72
SMC4Q9NTJ3 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC19.58■□□□□ 0.72
SMC4Q9NTJ3 PRSS30P-206ENST00000641773 873 ntBASIC19.58■□□□□ 0.72
SMC4Q9NTJ3 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC19.58■□□□□ 0.72
SMC4Q9NTJ3 AGTPBP1-208ENST00000628899 4222 ntTSL 2 BASIC19.58■□□□□ 0.72
SMC4Q9NTJ3 RASGRF1-203ENST00000558480 6237 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.72
SMC4Q9NTJ3 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
SMC4Q9NTJ3 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
SMC4Q9NTJ3 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
SMC4Q9NTJ3 AL137783.1-201ENST00000623494 1896 ntBASIC19.58■□□□□ 0.72
SMC4Q9NTJ3 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
SMC4Q9NTJ3 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
SMC4Q9NTJ3 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC19.58■□□□□ 0.72
SMC4Q9NTJ3 TBPL2-201ENST00000247219 2037 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
SMC4Q9NTJ3 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC19.57■□□□□ 0.72
SMC4Q9NTJ3 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC19.57■□□□□ 0.72
SMC4Q9NTJ3 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 53.4 ms