Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC13.28□□□□□ -0.28
CHMP1AQ9HD42 RCSD1-202ENST00000367854 3135 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
CHMP1AQ9HD42 PI4KA-201ENST00000255882 6752 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
CHMP1AQ9HD42 CILP2-202ENST00000586018 4234 ntAPPRIS ALT1 TSL 2 BASIC13.28□□□□□ -0.28
CHMP1AQ9HD42 HNRNPH1-201ENST00000329433 2114 ntTSL 2 BASIC13.28□□□□□ -0.28
CHMP1AQ9HD42 PPP1R12A-AS1-201ENST00000552885 3234 ntTSL 3 BASIC13.28□□□□□ -0.28
CHMP1AQ9HD42 ADCYAP1R1-201ENST00000304166 6487 ntAPPRIS P3 TSL 2 BASIC13.28□□□□□ -0.28
CHMP1AQ9HD42 PLA2G4B-202ENST00000458483 2734 ntAPPRIS P1 TSL 2 BASIC13.28□□□□□ -0.28
CHMP1AQ9HD42 MAN1B1-202ENST00000371589 2769 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
CHMP1AQ9HD42 CAPN1-224ENST00000533129 2792 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
CHMP1AQ9HD42 KCNH4-201ENST00000264661 3920 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
CHMP1AQ9HD42 AC005252.3-201ENST00000623855 2258 ntBASIC13.28□□□□□ -0.28
CHMP1AQ9HD42 PBX3-203ENST00000373487 2902 ntTSL 5 BASIC13.28□□□□□ -0.28
CHMP1AQ9HD42 DENND3-202ENST00000424248 4740 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
CHMP1AQ9HD42 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC13.28□□□□□ -0.28
CHMP1AQ9HD42 TCF12-201ENST00000267811 6061 ntAPPRIS ALT1 TSL 1 (best) BASIC13.28□□□□□ -0.28
CHMP1AQ9HD42 RAB18-208ENST00000611151 4931 ntTSL 5 BASIC13.28□□□□□ -0.28
CHMP1AQ9HD42 PRSS8-201ENST00000317508 1872 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
CHMP1AQ9HD42 IMPACT-201ENST00000284202 3792 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
CHMP1AQ9HD42 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC13.28□□□□□ -0.28
CHMP1AQ9HD42 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC13.28□□□□□ -0.28
CHMP1AQ9HD42 TIMM8BP1-201ENST00000452384 211 ntBASIC13.28□□□□□ -0.28
CHMP1AQ9HD42 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
CHMP1AQ9HD42 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC13.28□□□□□ -0.28
CHMP1AQ9HD42 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC13.28□□□□□ -0.28
CHMP1AQ9HD42 MAX-210ENST00000555419 765 ntTSL 5 BASIC13.28□□□□□ -0.28
CHMP1AQ9HD42 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC13.28□□□□□ -0.28
CHMP1AQ9HD42 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
CHMP1AQ9HD42 ARAP1-202ENST00000359373 5767 ntAPPRIS ALT2 TSL 2 BASIC13.28□□□□□ -0.28
CHMP1AQ9HD42 DHCR7-202ENST00000407721 2601 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
CHMP1AQ9HD42 DBR1-201ENST00000260803 2666 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
CHMP1AQ9HD42 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
CHMP1AQ9HD42 SUSD6-201ENST00000342745 5388 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
CHMP1AQ9HD42 ZBTB17-202ENST00000375743 2745 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
CHMP1AQ9HD42 KRT8P44-201ENST00000441609 1350 ntBASIC13.28□□□□□ -0.28
CHMP1AQ9HD42 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC13.28□□□□□ -0.28
CHMP1AQ9HD42 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
CHMP1AQ9HD42 AC092053.3-201ENST00000641308 4975 ntBASIC13.28□□□□□ -0.28
CHMP1AQ9HD42 YTHDF3-209ENST00000617200 5076 ntTSL 5 BASIC13.28□□□□□ -0.28
CHMP1AQ9HD42 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC13.28□□□□□ -0.28
CHMP1AQ9HD42 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
CHMP1AQ9HD42 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC13.28□□□□□ -0.28
CHMP1AQ9HD42 PTPRN-201ENST00000295718 3784 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
CHMP1AQ9HD42 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC13.28□□□□□ -0.28
CHMP1AQ9HD42 RGMB-201ENST00000308234 4580 ntAPPRIS P2 TSL 1 (best) BASIC13.28□□□□□ -0.28
CHMP1AQ9HD42 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
CHMP1AQ9HD42 SOAT1-204ENST00000540564 6861 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
CHMP1AQ9HD42 C17orf107-201ENST00000381365 3199 ntAPPRIS P2 TSL 2 BASIC13.28□□□□□ -0.28
CHMP1AQ9HD42 CLEC12A-AS1-201ENST00000420905 3956 ntTSL 2 BASIC13.28□□□□□ -0.28
CHMP1AQ9HD42 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC13.28□□□□□ -0.28
CHMP1AQ9HD42 CRYBG2-210ENST00000527815 2523 ntAPPRIS ALT2 TSL 2 BASIC13.28□□□□□ -0.28
CHMP1AQ9HD42 SAFB2-201ENST00000252542 3371 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
CHMP1AQ9HD42 GAS2L1-209ENST00000618518 3382 ntAPPRIS P1 TSL 2 BASIC13.28□□□□□ -0.28
CHMP1AQ9HD42 ARID3B-201ENST00000346246 4271 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.28
CHMP1AQ9HD42 LIN9-201ENST00000328205 3567 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
CHMP1AQ9HD42 ARHGAP9-213ENST00000550288 2818 ntTSL 2 BASIC13.27□□□□□ -0.28
CHMP1AQ9HD42 BDKRB2-202ENST00000542454 6845 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
CHMP1AQ9HD42 FAM213A-205ENST00000606162 5859 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
CHMP1AQ9HD42 AC023024.2-201ENST00000623561 1993 ntBASIC13.27□□□□□ -0.28
CHMP1AQ9HD42 NFS1-203ENST00000374092 3012 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
CHMP1AQ9HD42 SERINC2-206ENST00000536859 2072 ntTSL 2 BASIC13.27□□□□□ -0.28
CHMP1AQ9HD42 STRCP1-201ENST00000509801 5328 ntBASIC13.27□□□□□ -0.28
CHMP1AQ9HD42 CHD5-201ENST00000262450 9646 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
CHMP1AQ9HD42 LINC01271-201ENST00000441214 2250 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
CHMP1AQ9HD42 COL6A2-201ENST00000300527 3461 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
CHMP1AQ9HD42 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
CHMP1AQ9HD42 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
CHMP1AQ9HD42 LINC00987-201ENST00000427111 2472 ntTSL 2 BASIC13.27□□□□□ -0.29
CHMP1AQ9HD42 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC13.27□□□□□ -0.29
CHMP1AQ9HD42 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
CHMP1AQ9HD42 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
CHMP1AQ9HD42 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC13.27□□□□□ -0.29
CHMP1AQ9HD42 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
CHMP1AQ9HD42 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
CHMP1AQ9HD42 AC023274.1-201ENST00000418278 595 ntBASIC13.27□□□□□ -0.29
CHMP1AQ9HD42 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC13.27□□□□□ -0.29
CHMP1AQ9HD42 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.29
CHMP1AQ9HD42 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC13.27□□□□□ -0.29
CHMP1AQ9HD42 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC13.27□□□□□ -0.29
CHMP1AQ9HD42 AP000842.3-202ENST00000569238 1080 ntBASIC13.27□□□□□ -0.29
CHMP1AQ9HD42 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC13.27□□□□□ -0.29
CHMP1AQ9HD42 AC026120.1-201ENST00000611536 926 ntBASIC13.27□□□□□ -0.29
CHMP1AQ9HD42 FAM197Y3-203ENST00000618346 717 ntBASIC13.27□□□□□ -0.29
CHMP1AQ9HD42 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC13.27□□□□□ -0.29
CHMP1AQ9HD42 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.29
CHMP1AQ9HD42 INSRR-201ENST00000368195 5101 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
CHMP1AQ9HD42 TDRD12-202ENST00000444215 3934 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
CHMP1AQ9HD42 ERLIN2-205ENST00000518586 2623 ntTSL 2 BASIC13.27□□□□□ -0.29
CHMP1AQ9HD42 HNRNPLL-205ENST00000409636 3980 ntTSL 2 BASIC13.27□□□□□ -0.29
CHMP1AQ9HD42 TJP2-208ENST00000535702 3984 ntAPPRIS ALT2 TSL 2 BASIC13.27□□□□□ -0.29
CHMP1AQ9HD42 VPS9D1-201ENST00000389386 2748 ntAPPRIS P2 TSL 1 (best) BASIC13.27□□□□□ -0.29
CHMP1AQ9HD42 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC13.27□□□□□ -0.29
CHMP1AQ9HD42 CCNF-202ENST00000397066 4283 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
CHMP1AQ9HD42 PSMC1-201ENST00000261303 4448 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
CHMP1AQ9HD42 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC13.27□□□□□ -0.29
CHMP1AQ9HD42 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC13.27□□□□□ -0.29
CHMP1AQ9HD42 PER3-209ENST00000614998 6261 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.29
CHMP1AQ9HD42 ERN2-202ENST00000457008 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.29
CHMP1AQ9HD42 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
CHMP1AQ9HD42 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC13.27□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 57.2 ms