Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 PPT1-213ENST00000641319 2388 ntBASIC14.93□□□□□ -0.02
CCDC28BQ9BUN5 TMEM231-207ENST00000568377 2920 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
CCDC28BQ9BUN5 CTCFL-205ENST00000423479 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
CCDC28BQ9BUN5 CYP1A1-207ENST00000567032 2107 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CCDC28BQ9BUN5 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CCDC28BQ9BUN5 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
CCDC28BQ9BUN5 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC14.93□□□□□ -0.02
CCDC28BQ9BUN5 AC011474.4-201ENST00000623523 2076 ntBASIC14.93□□□□□ -0.02
CCDC28BQ9BUN5 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC14.92□□□□□ -0.02
CCDC28BQ9BUN5 DKFZP434A062-201ENST00000573103 5021 ntBASIC14.92□□□□□ -0.02
CCDC28BQ9BUN5 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
CCDC28BQ9BUN5 WNT9B-202ENST00000393461 2654 ntTSL 2 BASIC14.92□□□□□ -0.02
CCDC28BQ9BUN5 SLC26A11-201ENST00000361193 2885 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
CCDC28BQ9BUN5 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
CCDC28BQ9BUN5 CMBL-201ENST00000296658 2335 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
CCDC28BQ9BUN5 GLIPR1L2-204ENST00000550916 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
CCDC28BQ9BUN5 NBEA-203ENST00000379939 10738 ntAPPRIS ALT1 TSL 5 BASIC14.92□□□□□ -0.02
CCDC28BQ9BUN5 CDT1-201ENST00000301019 3240 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
CCDC28BQ9BUN5 ATXN2L-204ENST00000382686 3739 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
CCDC28BQ9BUN5 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC14.92□□□□□ -0.02
CCDC28BQ9BUN5 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
CCDC28BQ9BUN5 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC14.92□□□□□ -0.02
CCDC28BQ9BUN5 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC14.92□□□□□ -0.02
CCDC28BQ9BUN5 PTK7-212ENST00000476760 902 ntTSL 2 BASIC14.92□□□□□ -0.02
CCDC28BQ9BUN5 SLED1-202ENST00000512051 380 ntBASIC14.92□□□□□ -0.02
CCDC28BQ9BUN5 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC14.92□□□□□ -0.02
CCDC28BQ9BUN5 RPL18-209ENST00000550645 463 ntTSL 5 BASIC14.92□□□□□ -0.02
CCDC28BQ9BUN5 RPL18-214ENST00000552588 559 ntTSL 3 BASIC14.92□□□□□ -0.02
CCDC28BQ9BUN5 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC14.92□□□□□ -0.02
CCDC28BQ9BUN5 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
CCDC28BQ9BUN5 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC14.92□□□□□ -0.02
CCDC28BQ9BUN5 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC14.92□□□□□ -0.02
CCDC28BQ9BUN5 KCTD3-201ENST00000259154 3931 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
CCDC28BQ9BUN5 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
CCDC28BQ9BUN5 USP47-207ENST00000527733 4525 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
CCDC28BQ9BUN5 TK1-203ENST00000588734 1681 ntTSL 2 BASIC14.92□□□□□ -0.02
CCDC28BQ9BUN5 FXR1-214ENST00000480918 1996 ntTSL 2 BASIC14.92□□□□□ -0.02
CCDC28BQ9BUN5 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
CCDC28BQ9BUN5 LRRC41-208ENST00000617760 2158 ntTSL 5 BASIC14.92□□□□□ -0.02
CCDC28BQ9BUN5 RPUSD2-201ENST00000315616 2358 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
CCDC28BQ9BUN5 TET2-207ENST00000513237 10166 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
CCDC28BQ9BUN5 TET2-209ENST00000540549 10166 ntAPPRIS P2 TSL 1 (best) BASIC14.92□□□□□ -0.02
CCDC28BQ9BUN5 ATE1-203ENST00000369043 4900 ntAPPRIS ALT1 TSL 1 (best) BASIC14.92□□□□□ -0.02
CCDC28BQ9BUN5 HIC2-202ENST00000407598 4734 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
CCDC28BQ9BUN5 CDYL-205ENST00000449732 2139 ntTSL 2 BASIC14.92□□□□□ -0.02
CCDC28BQ9BUN5 KCNJ11-204ENST00000528731 2146 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
CCDC28BQ9BUN5 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
CCDC28BQ9BUN5 EDEM2-202ENST00000374492 1919 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
CCDC28BQ9BUN5 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
CCDC28BQ9BUN5 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
CCDC28BQ9BUN5 PCDHB13-201ENST00000341948 5061 ntAPPRIS P1 BASIC14.92□□□□□ -0.02
CCDC28BQ9BUN5 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC14.92□□□□□ -0.02
CCDC28BQ9BUN5 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
CCDC28BQ9BUN5 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC14.92□□□□□ -0.02
CCDC28BQ9BUN5 PTPN5-204ENST00000396170 3871 ntTSL 2 BASIC14.92□□□□□ -0.02
CCDC28BQ9BUN5 RBM6-201ENST00000266022 3750 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
CCDC28BQ9BUN5 ITSN1-204ENST00000381285 6107 ntTSL 5 BASIC14.91□□□□□ -0.02
CCDC28BQ9BUN5 NUTM2E-201ENST00000429984 3292 ntAPPRIS P5 TSL 5 BASIC14.91□□□□□ -0.02
CCDC28BQ9BUN5 ARMC5-202ENST00000408912 3626 ntAPPRIS ALT2 TSL 2 BASIC14.91□□□□□ -0.02
CCDC28BQ9BUN5 AC067750.1-201ENST00000608826 6545 ntBASIC14.91□□□□□ -0.02
CCDC28BQ9BUN5 TTLL10-AS1-201ENST00000379317 3532 ntTSL 2 BASIC14.91□□□□□ -0.02
CCDC28BQ9BUN5 CEP135-202ENST00000422247 2092 ntTSL 2 BASIC14.91□□□□□ -0.02
CCDC28BQ9BUN5 CLEC16A-203ENST00000409790 6891 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
CCDC28BQ9BUN5 ZNF354B-201ENST00000322434 2802 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CCDC28BQ9BUN5 KLHL25-201ENST00000337975 3758 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CCDC28BQ9BUN5 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.02
CCDC28BQ9BUN5 DUSP27-201ENST00000271385 3597 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CCDC28BQ9BUN5 LARGE1-201ENST00000354992 4409 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CCDC28BQ9BUN5 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
CCDC28BQ9BUN5 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CCDC28BQ9BUN5 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.02
CCDC28BQ9BUN5 MYADM-203ENST00000391769 3186 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CCDC28BQ9BUN5 GLI2-203ENST00000361492 6768 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CCDC28BQ9BUN5 SLC4A7-212ENST00000446700 4000 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
CCDC28BQ9BUN5 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CCDC28BQ9BUN5 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CCDC28BQ9BUN5 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC14.91□□□□□ -0.02
CCDC28BQ9BUN5 TPT1P11-201ENST00000458482 498 ntBASIC14.91□□□□□ -0.02
CCDC28BQ9BUN5 GATB-205ENST00000508611 605 ntTSL 2 BASIC14.91□□□□□ -0.02
CCDC28BQ9BUN5 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC14.91□□□□□ -0.02
CCDC28BQ9BUN5 AC136601.1-201ENST00000521803 666 ntTSL 3 BASIC14.91□□□□□ -0.02
CCDC28BQ9BUN5 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC14.91□□□□□ -0.02
CCDC28BQ9BUN5 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC14.91□□□□□ -0.02
CCDC28BQ9BUN5 TBCB-211ENST00000589996 724 ntTSL 3 BASIC14.91□□□□□ -0.02
CCDC28BQ9BUN5 DKKL1-202ENST00000594268 524 ntAPPRIS ALT2 TSL 2 BASIC14.91□□□□□ -0.02
CCDC28BQ9BUN5 AC055717.3-201ENST00000622967 595 ntBASIC14.91□□□□□ -0.02
CCDC28BQ9BUN5 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC14.91□□□□□ -0.02
CCDC28BQ9BUN5 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC14.91□□□□□ -0.02
CCDC28BQ9BUN5 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CCDC28BQ9BUN5 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CCDC28BQ9BUN5 PRAMEF25-202ENST00000619661 1840 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CCDC28BQ9BUN5 GLI2-210ENST00000452319 6799 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
CCDC28BQ9BUN5 ACE-201ENST00000290863 2479 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
CCDC28BQ9BUN5 CLCNKA-201ENST00000331433 2475 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
CCDC28BQ9BUN5 NTRK2-202ENST00000304053 8226 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
CCDC28BQ9BUN5 AKNA-204ENST00000374075 5038 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
CCDC28BQ9BUN5 SHPK-201ENST00000225519 3838 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CCDC28BQ9BUN5 NATD1-201ENST00000611551 4931 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CCDC28BQ9BUN5 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC14.91□□□□□ -0.02
CCDC28BQ9BUN5 PUS1-202ENST00000376649 4094 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 43.4 ms