Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
CCDC42Q96M95 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC16.55■□□□□ 0.24
CCDC42Q96M95 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CCDC42Q96M95 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CCDC42Q96M95 RPL30-202ENST00000396070 440 ntTSL 2 BASIC16.55■□□□□ 0.24
CCDC42Q96M95 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC16.55■□□□□ 0.24
CCDC42Q96M95 AC015922.1-201ENST00000421102 1152 ntBASIC16.55■□□□□ 0.24
CCDC42Q96M95 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC16.55■□□□□ 0.24
CCDC42Q96M95 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC16.55■□□□□ 0.24
CCDC42Q96M95 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC16.55■□□□□ 0.24
CCDC42Q96M95 MIR6080-201ENST00000617359 66 ntBASIC16.55■□□□□ 0.24
CCDC42Q96M95 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC16.55■□□□□ 0.24
CCDC42Q96M95 AL033527.5-202ENST00000641632 1098 ntBASIC16.55■□□□□ 0.24
CCDC42Q96M95 AP001627.1-201ENST00000437426 1754 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
CCDC42Q96M95 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC16.55■□□□□ 0.24
CCDC42Q96M95 CETN4P-206ENST00000642099 2168 ntBASIC16.55■□□□□ 0.24
CCDC42Q96M95 GOPC-201ENST00000052569 4590 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CCDC42Q96M95 TPO-201ENST00000329066 3138 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CCDC42Q96M95 RCSD1-202ENST00000367854 3135 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
CCDC42Q96M95 SLC6A20-202ENST00000358525 5423 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CCDC42Q96M95 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC16.55■□□□□ 0.24
CCDC42Q96M95 TRIM67-201ENST00000366653 3936 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
CCDC42Q96M95 GGT1-202ENST00000400380 2540 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CCDC42Q96M95 TMEM230-202ENST00000342308 1562 ntTSL 2 BASIC16.55■□□□□ 0.24
CCDC42Q96M95 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC16.55■□□□□ 0.24
CCDC42Q96M95 AC007787.1-201ENST00000588095 1583 ntBASIC16.55■□□□□ 0.24
CCDC42Q96M95 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC16.55■□□□□ 0.24
CCDC42Q96M95 ALDOA-203ENST00000395248 2447 ntTSL 5 BASIC16.55■□□□□ 0.24
CCDC42Q96M95 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
CCDC42Q96M95 SIGLEC9-202ENST00000440804 1960 ntAPPRIS ALT2 TSL 2 BASIC16.55■□□□□ 0.24
CCDC42Q96M95 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
CCDC42Q96M95 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC16.55■□□□□ 0.24
CCDC42Q96M95 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CCDC42Q96M95 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC16.55■□□□□ 0.24
CCDC42Q96M95 CAMKK2-202ENST00000337174 5304 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
CCDC42Q96M95 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CCDC42Q96M95 KIAA0895L-202ENST00000561621 3500 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CCDC42Q96M95 RAPGEF4-201ENST00000397081 4299 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CCDC42Q96M95 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CCDC42Q96M95 SYMPK-213ENST00000599460 5449 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CCDC42Q96M95 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
CCDC42Q96M95 SFMBT1-201ENST00000394752 4548 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CCDC42Q96M95 TAF5-201ENST00000369839 3268 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CCDC42Q96M95 GAK-201ENST00000314167 4442 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CCDC42Q96M95 FZD5-201ENST00000295417 6708 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CCDC42Q96M95 NUP98-203ENST00000359171 7023 ntTSL 5 BASIC16.54■□□□□ 0.24
CCDC42Q96M95 HTR3A-205ENST00000504030 2432 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CCDC42Q96M95 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CCDC42Q96M95 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CCDC42Q96M95 CAB39-201ENST00000258418 3826 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CCDC42Q96M95 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CCDC42Q96M95 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CCDC42Q96M95 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
CCDC42Q96M95 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
CCDC42Q96M95 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC16.54■□□□□ 0.24
CCDC42Q96M95 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CCDC42Q96M95 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC16.54■□□□□ 0.24
CCDC42Q96M95 DNAJB3-201ENST00000446806 729 ntBASIC16.54■□□□□ 0.24
CCDC42Q96M95 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC16.54■□□□□ 0.24
CCDC42Q96M95 YBX1P5-201ENST00000509441 847 ntBASIC16.54■□□□□ 0.24
CCDC42Q96M95 AP000344.2-201ENST00000512987 629 ntBASIC16.54■□□□□ 0.24
CCDC42Q96M95 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC16.54■□□□□ 0.24
CCDC42Q96M95 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
CCDC42Q96M95 AL356805.1-201ENST00000556383 341 ntTSL 3 BASIC16.54■□□□□ 0.24
CCDC42Q96M95 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC16.54■□□□□ 0.24
CCDC42Q96M95 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CCDC42Q96M95 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
CCDC42Q96M95 AC025048.3-201ENST00000590609 569 ntBASIC16.54■□□□□ 0.24
CCDC42Q96M95 AC004835.2-201ENST00000603762 682 ntBASIC16.54■□□□□ 0.24
CCDC42Q96M95 AC005702.4-201ENST00000618393 416 ntBASIC16.54■□□□□ 0.24
CCDC42Q96M95 AF228730.6-201ENST00000641497 218 ntBASIC16.54■□□□□ 0.24
CCDC42Q96M95 AC084121.3-201ENST00000641716 218 ntBASIC16.54■□□□□ 0.24
CCDC42Q96M95 ADRB2-201ENST00000305988 3443 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
CCDC42Q96M95 LTBP3-221ENST00000532932 3327 ntTSL 2 BASIC16.54■□□□□ 0.24
CCDC42Q96M95 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CCDC42Q96M95 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
CCDC42Q96M95 AC104836.1-202ENST00000636805 6041 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
CCDC42Q96M95 C20orf166-AS1-203ENST00000475015 2585 ntTSL 2 BASIC16.54■□□□□ 0.24
CCDC42Q96M95 SLC22A12-203ENST00000377572 2887 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CCDC42Q96M95 CCT3-201ENST00000295688 2150 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CCDC42Q96M95 WARS2-202ENST00000369426 2811 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CCDC42Q96M95 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CCDC42Q96M95 TNFRSF11A-202ENST00000586569 8147 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
CCDC42Q96M95 AIFM1-209ENST00000535724 2468 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CCDC42Q96M95 CYP2AB1P-202ENST00000454440 1456 ntBASIC16.54■□□□□ 0.24
CCDC42Q96M95 VIPAS39-202ENST00000343765 2761 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CCDC42Q96M95 PLA2G4B-202ENST00000458483 2734 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
CCDC42Q96M95 NFS1-203ENST00000374092 3012 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CCDC42Q96M95 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CCDC42Q96M95 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC16.53■□□□□ 0.24
CCDC42Q96M95 POLR2E-211ENST00000612655 1749 ntAPPRIS P1 TSL 3 BASIC16.53■□□□□ 0.24
CCDC42Q96M95 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC16.53■□□□□ 0.24
CCDC42Q96M95 GPAT3-201ENST00000264409 2625 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CCDC42Q96M95 TRMT2B-201ENST00000372935 2921 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
CCDC42Q96M95 MFRP-201ENST00000360167 1663 ntTSL 2 BASIC16.53■□□□□ 0.24
CCDC42Q96M95 TRAK1-203ENST00000396175 5033 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
CCDC42Q96M95 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
CCDC42Q96M95 HOXB4-201ENST00000332503 3757 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CCDC42Q96M95 SEZ6-203ENST00000360295 4306 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
CCDC42Q96M95 TRAF3-202ENST00000351691 2239 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 41.5 ms