Protein–RNA interactions for Protein: Q8N205

SYNE4, Nesprin-4, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4Q8N205 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SYNE4Q8N205 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
SYNE4Q8N205 SLC38A5-213ENST00000620913 1993 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
SYNE4Q8N205 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
SYNE4Q8N205 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
SYNE4Q8N205 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
SYNE4Q8N205 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
SYNE4Q8N205 RPP40-201ENST00000319533 1088 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
SYNE4Q8N205 LAMTOR4-201ENST00000341942 605 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SYNE4Q8N205 GAD1-203ENST00000375272 1252 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
SYNE4Q8N205 VCPKMT-201ENST00000395859 795 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
SYNE4Q8N205 MRPL23-204ENST00000397297 613 ntTSL 2 BASIC18.81■□□□□ 0.6
SYNE4Q8N205 MAGEA5-201ENST00000446757 942 ntBASIC18.81■□□□□ 0.6
SYNE4Q8N205 FTLP1-201ENST00000449155 526 ntBASIC18.81■□□□□ 0.6
SYNE4Q8N205 AC021723.1-201ENST00000486306 515 ntBASIC18.81■□□□□ 0.6
SYNE4Q8N205 RCE1-204ENST00000525356 1270 ntTSL 5 BASIC18.81■□□□□ 0.6
SYNE4Q8N205 MBP-227ENST00000526111 581 ntTSL 4 BASIC18.81■□□□□ 0.6
SYNE4Q8N205 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
SYNE4Q8N205 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC18.81■□□□□ 0.6
SYNE4Q8N205 EID1-202ENST00000560490 584 ntTSL 3 BASIC18.81■□□□□ 0.6
SYNE4Q8N205 C15orf40-211ENST00000565712 559 ntTSL 3 BASIC18.81■□□□□ 0.6
SYNE4Q8N205 AC009955.4-201ENST00000597192 544 ntBASIC18.81■□□□□ 0.6
SYNE4Q8N205 AC138696.2-201ENST00000607376 223 ntBASIC18.81■□□□□ 0.6
SYNE4Q8N205 AL162426.1-201ENST00000624141 743 ntBASIC18.81■□□□□ 0.6
SYNE4Q8N205 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC18.81■□□□□ 0.6
SYNE4Q8N205 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
SYNE4Q8N205 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC18.81■□□□□ 0.6
SYNE4Q8N205 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SYNE4Q8N205 ANXA6-202ENST00000377751 1430 ntTSL 2 BASIC18.81■□□□□ 0.6
SYNE4Q8N205 FSD1L-206ENST00000481272 1804 ntTSL 2 BASIC18.81■□□□□ 0.6
SYNE4Q8N205 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
SYNE4Q8N205 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
SYNE4Q8N205 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC18.81■□□□□ 0.6
SYNE4Q8N205 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SYNE4Q8N205 KRT8P29-201ENST00000420409 1371 ntBASIC18.81■□□□□ 0.6
SYNE4Q8N205 FAM180B-201ENST00000538490 1388 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SYNE4Q8N205 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
SYNE4Q8N205 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SYNE4Q8N205 AC004899.1-201ENST00000424687 1714 ntBASIC18.8■□□□□ 0.6
SYNE4Q8N205 ACSF2-202ENST00000427954 2251 ntTSL 2 BASIC18.8■□□□□ 0.6
SYNE4Q8N205 AC092978.1-201ENST00000474979 1309 ntTSL 5 BASIC18.8■□□□□ 0.6
SYNE4Q8N205 AC092978.1-202ENST00000637590 1327 ntBASIC18.8■□□□□ 0.6
SYNE4Q8N205 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SYNE4Q8N205 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SYNE4Q8N205 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
SYNE4Q8N205 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC18.8■□□□□ 0.6
SYNE4Q8N205 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SYNE4Q8N205 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC18.8■□□□□ 0.6
SYNE4Q8N205 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SYNE4Q8N205 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
SYNE4Q8N205 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
SYNE4Q8N205 CABP1-203ENST00000351200 770 ntAPPRIS ALT1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SYNE4Q8N205 C1orf53-201ENST00000367393 588 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SYNE4Q8N205 ARL16-201ENST00000397498 1227 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SYNE4Q8N205 AL008707.1-201ENST00000422498 534 ntBASIC18.8■□□□□ 0.6
SYNE4Q8N205 CMC1-204ENST00000423894 549 ntTSL 2 BASIC18.8■□□□□ 0.6
SYNE4Q8N205 FOXP4-AS1-203ENST00000439386 404 ntTSL 3 BASIC18.8■□□□□ 0.6
SYNE4Q8N205 KLF2P1-201ENST00000447438 1042 ntBASIC18.8■□□□□ 0.6
SYNE4Q8N205 KLK11-204ENST00000453757 1174 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
SYNE4Q8N205 NME2-204ENST00000503064 749 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SYNE4Q8N205 ZNF419-208ENST00000518999 746 ntTSL 3 BASIC18.8■□□□□ 0.6
SYNE4Q8N205 TCL1A-208ENST00000556450 872 ntAPPRIS P1 TSL 3 BASIC18.8■□□□□ 0.6
SYNE4Q8N205 AC108134.4-201ENST00000570700 302 ntTSL 3 BASIC18.8■□□□□ 0.6
SYNE4Q8N205 RN7SL574P-201ENST00000581512 297 ntBASIC18.8■□□□□ 0.6
SYNE4Q8N205 L34079.1-201ENST00000594374 393 ntAPPRIS P1 TSL 3 BASIC18.8■□□□□ 0.6
SYNE4Q8N205 AC091544.8-201ENST00000619490 361 ntBASIC18.8■□□□□ 0.6
SYNE4Q8N205 ARL16-214ENST00000621051 1181 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SYNE4Q8N205 AC079336.7-201ENST00000623428 1078 ntBASIC18.8■□□□□ 0.6
SYNE4Q8N205 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SYNE4Q8N205 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SYNE4Q8N205 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
SYNE4Q8N205 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SYNE4Q8N205 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SYNE4Q8N205 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC18.8■□□□□ 0.6
SYNE4Q8N205 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SYNE4Q8N205 TMEM51-204ENST00000428417 1942 ntAPPRIS P1 TSL 3 BASIC18.8■□□□□ 0.6
SYNE4Q8N205 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC18.8■□□□□ 0.6
SYNE4Q8N205 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SYNE4Q8N205 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC18.8■□□□□ 0.6
SYNE4Q8N205 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC18.79■□□□□ 0.6
SYNE4Q8N205 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC18.79■□□□□ 0.6
SYNE4Q8N205 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SYNE4Q8N205 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SYNE4Q8N205 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SYNE4Q8N205 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
SYNE4Q8N205 ZCCHC17-207ENST00000616859 1458 ntTSL 4 BASIC18.79■□□□□ 0.6
SYNE4Q8N205 ZCCHC17-208ENST00000618216 1489 ntTSL 3 BASIC18.79■□□□□ 0.6
SYNE4Q8N205 CCNE1-202ENST00000357943 1641 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SYNE4Q8N205 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
SYNE4Q8N205 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SYNE4Q8N205 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
SYNE4Q8N205 C9orf24-201ENST00000297623 1151 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SYNE4Q8N205 IGF1-201ENST00000307046 1097 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SYNE4Q8N205 NPPA-201ENST00000376476 728 ntTSL 3 BASIC18.79■□□□□ 0.6
SYNE4Q8N205 C9orf24-205ENST00000379133 712 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SYNE4Q8N205 IGF1-203ENST00000392904 761 ntTSL 5 BASIC18.79■□□□□ 0.6
SYNE4Q8N205 AL357558.1-201ENST00000416646 456 ntTSL 2 BASIC18.79■□□□□ 0.6
SYNE4Q8N205 GDAP1-202ENST00000434412 1228 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SYNE4Q8N205 DNAJC27-AS1-207ENST00000451291 488 ntTSL 3 BASIC18.79■□□□□ 0.6
SYNE4Q8N205 MAATS1-203ENST00000463700 939 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 41.5 ms