Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
PDLIM3Q53GG5 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC12.81□□□□□ -0.36
PDLIM3Q53GG5 SERPINA3-203ENST00000467132 2660 ntAPPRIS P1 TSL 2 BASIC12.81□□□□□ -0.36
PDLIM3Q53GG5 RGPD5-202ENST00000272454 2907 ntTSL 2 BASIC12.81□□□□□ -0.36
PDLIM3Q53GG5 AC020659.1-201ENST00000309874 2900 ntTSL 2 BASIC12.81□□□□□ -0.36
PDLIM3Q53GG5 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC12.81□□□□□ -0.36
PDLIM3Q53GG5 AC022144.1-201ENST00000602255 1580 ntBASIC12.81□□□□□ -0.36
PDLIM3Q53GG5 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
PDLIM3Q53GG5 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC12.81□□□□□ -0.36
PDLIM3Q53GG5 B9D1-209ENST00000477478 1353 ntTSL 3 BASIC12.81□□□□□ -0.36
PDLIM3Q53GG5 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
PDLIM3Q53GG5 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC12.81□□□□□ -0.36
PDLIM3Q53GG5 ITGA6-202ENST00000409080 5306 ntTSL 2 BASIC12.81□□□□□ -0.36
PDLIM3Q53GG5 COL8A2-201ENST00000303143 4447 ntAPPRIS P1 TSL 2 BASIC12.8□□□□□ -0.36
PDLIM3Q53GG5 IKZF1-218ENST00000615491 5637 ntTSL 5 BASIC12.8□□□□□ -0.36
PDLIM3Q53GG5 OGFOD3-201ENST00000313056 4287 ntAPPRIS P1 TSL 2 BASIC12.8□□□□□ -0.36
PDLIM3Q53GG5 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
PDLIM3Q53GG5 TCAF2P1-201ENST00000291129 2421 ntBASIC12.8□□□□□ -0.36
PDLIM3Q53GG5 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
PDLIM3Q53GG5 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC12.8□□□□□ -0.36
PDLIM3Q53GG5 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC12.8□□□□□ -0.36
PDLIM3Q53GG5 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC12.8□□□□□ -0.36
PDLIM3Q53GG5 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC12.8□□□□□ -0.36
PDLIM3Q53GG5 DESI2-202ENST00000302550 4208 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
PDLIM3Q53GG5 PWP2-201ENST00000291576 3297 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
PDLIM3Q53GG5 TBK1-201ENST00000331710 3256 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
PDLIM3Q53GG5 SLC6A5-202ENST00000525748 7084 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
PDLIM3Q53GG5 ZNF395-201ENST00000344423 4808 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
PDLIM3Q53GG5 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC12.8□□□□□ -0.36
PDLIM3Q53GG5 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
PDLIM3Q53GG5 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC12.8□□□□□ -0.36
PDLIM3Q53GG5 PPFIA4-202ENST00000295706 6395 ntAPPRIS ALT2 TSL 5 BASIC12.8□□□□□ -0.36
PDLIM3Q53GG5 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
PDLIM3Q53GG5 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
PDLIM3Q53GG5 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC12.8□□□□□ -0.36
PDLIM3Q53GG5 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC12.8□□□□□ -0.36
PDLIM3Q53GG5 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC12.8□□□□□ -0.36
PDLIM3Q53GG5 RN7SL752P-201ENST00000463779 287 ntBASIC12.8□□□□□ -0.36
PDLIM3Q53GG5 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC12.8□□□□□ -0.36
PDLIM3Q53GG5 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC12.8□□□□□ -0.36
PDLIM3Q53GG5 AC098859.1-201ENST00000502915 1238 ntBASIC12.8□□□□□ -0.36
PDLIM3Q53GG5 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC12.8□□□□□ -0.36
PDLIM3Q53GG5 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
PDLIM3Q53GG5 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC12.8□□□□□ -0.36
PDLIM3Q53GG5 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC12.8□□□□□ -0.36
PDLIM3Q53GG5 AC061975.2-201ENST00000581722 295 ntBASIC12.8□□□□□ -0.36
PDLIM3Q53GG5 AC024267.1-201ENST00000582320 895 ntBASIC12.8□□□□□ -0.36
PDLIM3Q53GG5 AC003101.2-201ENST00000612557 442 ntBASIC12.8□□□□□ -0.36
PDLIM3Q53GG5 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC12.8□□□□□ -0.36
PDLIM3Q53GG5 TRAF6-201ENST00000348124 2558 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
PDLIM3Q53GG5 HYAL2-201ENST00000357750 2055 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
PDLIM3Q53GG5 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
PDLIM3Q53GG5 ARHGEF7-201ENST00000218789 5233 ntTSL 5 BASIC12.8□□□□□ -0.36
PDLIM3Q53GG5 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
PDLIM3Q53GG5 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC12.8□□□□□ -0.36
PDLIM3Q53GG5 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
PDLIM3Q53GG5 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC12.8□□□□□ -0.36
PDLIM3Q53GG5 ZNF783-202ENST00000434415 4452 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
PDLIM3Q53GG5 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC12.8□□□□□ -0.36
PDLIM3Q53GG5 PTBP1-201ENST00000349038 3155 ntAPPRIS P3 TSL 1 (best) BASIC12.8□□□□□ -0.36
PDLIM3Q53GG5 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
PDLIM3Q53GG5 CYP4F3-201ENST00000221307 5050 ntAPPRIS P3 TSL 1 (best) BASIC12.8□□□□□ -0.36
PDLIM3Q53GG5 STK33-217ENST00000534493 1895 ntTSL 2 BASIC12.8□□□□□ -0.36
PDLIM3Q53GG5 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC12.8□□□□□ -0.36
PDLIM3Q53GG5 PTPN5-204ENST00000396170 3871 ntTSL 2 BASIC12.8□□□□□ -0.36
PDLIM3Q53GG5 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
PDLIM3Q53GG5 SLC4A5-201ENST00000346834 6233 ntAPPRIS P4 TSL 5 BASIC12.8□□□□□ -0.36
PDLIM3Q53GG5 MED14-201ENST00000324817 7984 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
PDLIM3Q53GG5 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
PDLIM3Q53GG5 PLSCR4-204ENST00000446574 1442 ntAPPRIS P1 TSL 2 BASIC12.79□□□□□ -0.36
PDLIM3Q53GG5 SLC35E2B-205ENST00000617444 6283 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
PDLIM3Q53GG5 MYO16-202ENST00000356711 6874 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
PDLIM3Q53GG5 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC12.79□□□□□ -0.36
PDLIM3Q53GG5 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
PDLIM3Q53GG5 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
PDLIM3Q53GG5 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC12.79□□□□□ -0.36
PDLIM3Q53GG5 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
PDLIM3Q53GG5 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
PDLIM3Q53GG5 POFUT1-202ENST00000375749 5235 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
PDLIM3Q53GG5 VAPA-202ENST00000400000 6815 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
PDLIM3Q53GG5 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC12.79□□□□□ -0.36
PDLIM3Q53GG5 COL4A1-201ENST00000375820 6532 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
PDLIM3Q53GG5 MSL2-201ENST00000309993 4692 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
PDLIM3Q53GG5 CLCN6-201ENST00000312413 5631 ntTSL 2 BASIC12.79□□□□□ -0.36
PDLIM3Q53GG5 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC12.79□□□□□ -0.36
PDLIM3Q53GG5 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
PDLIM3Q53GG5 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC12.79□□□□□ -0.36
PDLIM3Q53GG5 AC004987.2-201ENST00000395959 1148 ntBASIC12.79□□□□□ -0.36
PDLIM3Q53GG5 MPV17-208ENST00000405076 603 ntTSL 5 BASIC12.79□□□□□ -0.36
PDLIM3Q53GG5 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC12.79□□□□□ -0.36
PDLIM3Q53GG5 AP006294.1-201ENST00000415407 339 ntBASIC12.79□□□□□ -0.36
PDLIM3Q53GG5 LINC01806-201ENST00000436506 765 ntTSL 2 BASIC12.79□□□□□ -0.36
PDLIM3Q53GG5 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
PDLIM3Q53GG5 AC011495.1-201ENST00000498085 584 ntBASIC12.79□□□□□ -0.36
PDLIM3Q53GG5 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC12.79□□□□□ -0.36
PDLIM3Q53GG5 POLE2-203ENST00000553805 496 ntTSL 2 BASIC12.79□□□□□ -0.36
PDLIM3Q53GG5 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC12.79□□□□□ -0.36
PDLIM3Q53GG5 KRT8P23-201ENST00000560090 1207 ntBASIC12.79□□□□□ -0.36
PDLIM3Q53GG5 AL135744.1-201ENST00000565098 629 ntBASIC12.79□□□□□ -0.36
PDLIM3Q53GG5 PAM16-215ENST00000577031 548 ntTSL 4 BASIC12.79□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms