Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 AL157788.1-201ENST00000437838 229 ntTSL 3 BASIC18.29■□□□□ 0.52
CCDC88AQ3V6T2 FAM58BP-201ENST00000439056 645 ntBASIC18.29■□□□□ 0.52
CCDC88AQ3V6T2 LINC00431-201ENST00000440735 1189 ntTSL 5 BASIC18.29■□□□□ 0.52
CCDC88AQ3V6T2 AF111169.4-201ENST00000556368 749 ntTSL 2 BASIC18.29■□□□□ 0.52
CCDC88AQ3V6T2 REC114-202ENST00000560581 833 ntAPPRIS ALT2 TSL 2 BASIC18.29■□□□□ 0.52
CCDC88AQ3V6T2 DUX4L46-201ENST00000566845 751 ntBASIC18.29■□□□□ 0.52
CCDC88AQ3V6T2 AC011500.3-201ENST00000594676 647 ntTSL 4 BASIC18.29■□□□□ 0.52
CCDC88AQ3V6T2 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC18.29■□□□□ 0.52
CCDC88AQ3V6T2 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CCDC88AQ3V6T2 SLC44A3-209ENST00000532427 1912 ntTSL 2 BASIC18.29■□□□□ 0.52
CCDC88AQ3V6T2 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CCDC88AQ3V6T2 AC011840.2-201ENST00000563063 1520 ntBASIC18.29■□□□□ 0.52
CCDC88AQ3V6T2 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CCDC88AQ3V6T2 KRT8P31-201ENST00000504812 1408 ntBASIC18.29■□□□□ 0.52
CCDC88AQ3V6T2 KCTD1-207ENST00000580059 1425 ntAPPRIS P1 TSL 3 BASIC18.29■□□□□ 0.52
CCDC88AQ3V6T2 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CCDC88AQ3V6T2 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CCDC88AQ3V6T2 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
CCDC88AQ3V6T2 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
CCDC88AQ3V6T2 FXYD5-201ENST00000342879 1580 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
CCDC88AQ3V6T2 PES1-204ENST00000402284 2144 ntTSL 5 BASIC18.29■□□□□ 0.52
CCDC88AQ3V6T2 AP003680.1-201ENST00000598970 3660 ntBASIC18.29■□□□□ 0.52
CCDC88AQ3V6T2 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CCDC88AQ3V6T2 RPL35-201ENST00000348462 455 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CCDC88AQ3V6T2 RAB25-201ENST00000361084 1110 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CCDC88AQ3V6T2 MAGOH-202ENST00000371470 756 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CCDC88AQ3V6T2 CIDEC-202ENST00000383817 1199 ntAPPRIS ALT1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CCDC88AQ3V6T2 PTGES3-203ENST00000436399 941 ntTSL 2 BASIC18.29■□□□□ 0.52
CCDC88AQ3V6T2 DUTP3-201ENST00000450025 415 ntBASIC18.29■□□□□ 0.52
CCDC88AQ3V6T2 RN7SL258P-201ENST00000478664 300 ntBASIC18.29■□□□□ 0.52
CCDC88AQ3V6T2 ALG1L13P-204ENST00000523017 765 ntTSL 5 BASIC18.29■□□□□ 0.52
CCDC88AQ3V6T2 CLNS1A-211ENST00000532069 898 ntTSL 3 BASIC18.29■□□□□ 0.52
CCDC88AQ3V6T2 AC145207.8-201ENST00000580897 563 ntTSL 4 BASIC18.29■□□□□ 0.52
CCDC88AQ3V6T2 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC88AQ3V6T2 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC88AQ3V6T2 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC18.28■□□□□ 0.52
CCDC88AQ3V6T2 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC88AQ3V6T2 HLA-DQB2-231ENST00000435145 2026 ntBASIC18.28■□□□□ 0.52
CCDC88AQ3V6T2 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
CCDC88AQ3V6T2 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC88AQ3V6T2 AC090502.4-201ENST00000551714 1386 ntBASIC18.28■□□□□ 0.52
CCDC88AQ3V6T2 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC88AQ3V6T2 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC18.28■□□□□ 0.52
CCDC88AQ3V6T2 CHIA-204ENST00000369740 1625 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC88AQ3V6T2 SMTNL1-202ENST00000527972 1649 ntAPPRIS P2 TSL 5 BASIC18.28■□□□□ 0.52
CCDC88AQ3V6T2 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC88AQ3V6T2 TMEM208-201ENST00000304800 793 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC88AQ3V6T2 GON7-201ENST00000306954 1154 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC88AQ3V6T2 CRIP3-202ENST00000372569 962 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC88AQ3V6T2 AL583805.1-201ENST00000391389 531 ntBASIC18.28■□□□□ 0.52
CCDC88AQ3V6T2 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC88AQ3V6T2 AC135178.1-201ENST00000458568 537 ntTSL 3 BASIC18.28■□□□□ 0.52
CCDC88AQ3V6T2 PFN2-206ENST00000461930 606 ntTSL 4 BASIC18.28■□□□□ 0.52
CCDC88AQ3V6T2 FRMD4A-208ENST00000493380 1149 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC88AQ3V6T2 SDHAF2-206ENST00000542074 835 ntTSL 2 BASIC18.28■□□□□ 0.52
CCDC88AQ3V6T2 PAM16-211ENST00000575848 518 ntTSL 3 BASIC18.28■□□□□ 0.52
CCDC88AQ3V6T2 PAM16-214ENST00000576217 493 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
CCDC88AQ3V6T2 AC011462.2-201ENST00000598887 344 ntTSL 5 BASIC18.28■□□□□ 0.52
CCDC88AQ3V6T2 TMIGD2-204ENST00000600349 333 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC88AQ3V6T2 AP003392.6-201ENST00000607709 325 ntBASIC18.28■□□□□ 0.52
CCDC88AQ3V6T2 HIST1H3F-201ENST00000618052 411 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
CCDC88AQ3V6T2 AC138466.4-201ENST00000623965 852 ntBASIC18.28■□□□□ 0.52
CCDC88AQ3V6T2 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC18.28■□□□□ 0.52
CCDC88AQ3V6T2 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC88AQ3V6T2 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC88AQ3V6T2 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
CCDC88AQ3V6T2 MANEAL-201ENST00000329006 1930 ntTSL 2 BASIC18.28■□□□□ 0.52
CCDC88AQ3V6T2 AMT-239ENST00000636865 1914 ntTSL 5 BASIC18.28■□□□□ 0.52
CCDC88AQ3V6T2 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC88AQ3V6T2 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC88AQ3V6T2 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC88AQ3V6T2 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
CCDC88AQ3V6T2 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC18.28■□□□□ 0.52
CCDC88AQ3V6T2 CTSW-204ENST00000528419 1341 ntTSL 2 BASIC18.28■□□□□ 0.52
CCDC88AQ3V6T2 LINC00470-210ENST00000584090 1334 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC88AQ3V6T2 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC18.28■□□□□ 0.52
CCDC88AQ3V6T2 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC18.28■□□□□ 0.52
CCDC88AQ3V6T2 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CCDC88AQ3V6T2 MYADM-202ENST00000391768 1492 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CCDC88AQ3V6T2 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC18.27■□□□□ 0.52
CCDC88AQ3V6T2 AC020658.6-201ENST00000623564 1870 ntBASIC18.27■□□□□ 0.52
CCDC88AQ3V6T2 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
CCDC88AQ3V6T2 PCNA-202ENST00000379160 1359 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
CCDC88AQ3V6T2 CICP11-201ENST00000434745 2827 ntBASIC18.27■□□□□ 0.52
CCDC88AQ3V6T2 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CCDC88AQ3V6T2 METTL17-221ENST00000556670 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
CCDC88AQ3V6T2 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
CCDC88AQ3V6T2 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CCDC88AQ3V6T2 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
CCDC88AQ3V6T2 HPGD-203ENST00000422112 805 ntTSL 2 BASIC18.27■□□□□ 0.52
CCDC88AQ3V6T2 PCMTD1-207ENST00000522514 1287 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
CCDC88AQ3V6T2 AC100827.2-201ENST00000563214 1194 ntBASIC18.27■□□□□ 0.52
CCDC88AQ3V6T2 ZSCAN10-205ENST00000572548 618 ntTSL 3 BASIC18.27■□□□□ 0.52
CCDC88AQ3V6T2 NRN1L-202ENST00000576147 681 ntAPPRIS ALT2 TSL 2 BASIC18.27■□□□□ 0.52
CCDC88AQ3V6T2 HPN-206ENST00000597419 1212 ntTSL 5 BASIC18.27■□□□□ 0.52
CCDC88AQ3V6T2 TOMM7-207ENST00000621567 241 ntAPPRIS ALT1 TSL 5 BASIC18.27■□□□□ 0.52
CCDC88AQ3V6T2 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CCDC88AQ3V6T2 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
CCDC88AQ3V6T2 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CCDC88AQ3V6T2 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC18.27■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 63.8 ms