Protein–RNA interactions for Protein: P61011

SRP54, Signal recognition particle 54 kDa protein, humanhuman

Known RBP Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54P61011 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
SRP54P61011 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SRP54P61011 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
SRP54P61011 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SRP54P61011 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SRP54P61011 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC15.13■□□□□ 0.01
SRP54P61011 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
SRP54P61011 HIPK4-201ENST00000291823 2452 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SRP54P61011 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SRP54P61011 PAK4-208ENST00000599386 5735 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
SRP54P61011 ITSN1-205ENST00000381291 5437 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
SRP54P61011 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
SRP54P61011 RET-202ENST00000355710 5659 ntAPPRIS P3 TSL 5 BASIC15.12■□□□□ 0.01
SRP54P61011 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SRP54P61011 RWDD4-205ENST00000510968 1551 ntTSL 4 BASIC15.12■□□□□ 0.01
SRP54P61011 AC007787.1-201ENST00000588095 1583 ntBASIC15.12■□□□□ 0.01
SRP54P61011 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC15.12■□□□□ 0.01
SRP54P61011 GOLGA7B-201ENST00000370602 6447 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SRP54P61011 C4A-259ENST00000498271 5269 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
SRP54P61011 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC15.12■□□□□ 0.01
SRP54P61011 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC15.12■□□□□ 0.01
SRP54P61011 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SRP54P61011 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SRP54P61011 GUK1-206ENST00000366723 845 ntTSL 5 BASIC15.12■□□□□ 0.01
SRP54P61011 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SRP54P61011 PEMT-203ENST00000395782 895 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SRP54P61011 ACTBP8-201ENST00000403258 1108 ntBASIC15.12■□□□□ 0.01
SRP54P61011 ROPN1-202ENST00000405845 1007 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SRP54P61011 AC026954.1-201ENST00000429771 1293 ntBASIC15.12■□□□□ 0.01
SRP54P61011 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
SRP54P61011 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
SRP54P61011 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
SRP54P61011 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC15.12■□□□□ 0.01
SRP54P61011 POLR2F-208ENST00000470701 584 ntTSL 3 BASIC15.12■□□□□ 0.01
SRP54P61011 STAG3L5P-205ENST00000473757 1255 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
SRP54P61011 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
SRP54P61011 OSGIN2-203ENST00000520659 801 ntTSL 2 BASIC15.12■□□□□ 0.01
SRP54P61011 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
SRP54P61011 DPF3-210ENST00000556509 1138 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SRP54P61011 AC105020.3-201ENST00000566036 560 ntTSL 4 BASIC15.12■□□□□ 0.01
SRP54P61011 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC15.12■□□□□ 0.01
SRP54P61011 FBXL12-211ENST00000591009 1005 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
SRP54P61011 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC15.12■□□□□ 0.01
SRP54P61011 AC132938.4-201ENST00000623835 848 ntBASIC15.12■□□□□ 0.01
SRP54P61011 SLC9A7P1-201ENST00000554295 3311 ntBASIC15.12■□□□□ 0.01
SRP54P61011 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
SRP54P61011 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC15.12■□□□□ 0.01
SRP54P61011 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC15.12■□□□□ 0.01
SRP54P61011 RUNX1T1-251ENST00000615601 7372 ntAPPRIS ALT1 TSL 5 BASIC15.12■□□□□ 0.01
SRP54P61011 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC15.12■□□□□ 0.01
SRP54P61011 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SRP54P61011 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SRP54P61011 MPP6-201ENST00000222644 8452 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SRP54P61011 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
SRP54P61011 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SRP54P61011 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SRP54P61011 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC15.12■□□□□ 0.01
SRP54P61011 CTXND1-201ENST00000560778 6890 ntAPPRIS P1 TSL 3 BASIC15.11■□□□□ 0.01
SRP54P61011 YPEL1-201ENST00000339468 4329 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SRP54P61011 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SRP54P61011 GPSM1-205ENST00000440944 3633 ntAPPRIS P2 TSL 5 BASIC15.11■□□□□ 0.01
SRP54P61011 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC15.11■□□□□ 0.01
SRP54P61011 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
SRP54P61011 ALG12-201ENST00000330817 5350 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SRP54P61011 GRIK5-204ENST00000593562 3308 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
SRP54P61011 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC15.11■□□□□ 0.01
SRP54P61011 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SRP54P61011 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC15.11■□□□□ 0.01
SRP54P61011 MTA3-203ENST00000406652 5484 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
SRP54P61011 FAM84A-201ENST00000295092 6355 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SRP54P61011 EDN2-201ENST00000372587 1241 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SRP54P61011 AL645937.2-201ENST00000396808 931 ntBASIC15.11■□□□□ 0.01
SRP54P61011 RPL5P21-201ENST00000404620 815 ntBASIC15.11■□□□□ 0.01
SRP54P61011 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC15.11■□□□□ 0.01
SRP54P61011 YBX1P6-201ENST00000442962 1002 ntBASIC15.11■□□□□ 0.01
SRP54P61011 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC15.11■□□□□ 0.01
SRP54P61011 AC106772.2-201ENST00000515085 442 ntTSL 3 BASIC15.11■□□□□ 0.01
SRP54P61011 AP002992.1-201ENST00000527519 491 ntTSL 3 BASIC15.11■□□□□ 0.01
SRP54P61011 MIR22HG-212ENST00000577164 931 ntTSL 4 BASIC15.11■□□□□ 0.01
SRP54P61011 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC15.11■□□□□ 0.01
SRP54P61011 TECR-207ENST00000596073 1170 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
SRP54P61011 TECR-220ENST00000600083 1204 ntTSL 2 BASIC15.11■□□□□ 0.01
SRP54P61011 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC15.11■□□□□ 0.01
SRP54P61011 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC15.11■□□□□ 0.01
SRP54P61011 AL645728.2-202ENST00000641679 227 ntBASIC15.11■□□□□ 0.01
SRP54P61011 PRSS30P-206ENST00000641773 873 ntBASIC15.11■□□□□ 0.01
SRP54P61011 AL138709.1-201ENST00000614840 1693 ntBASIC15.11■□□□□ 0.01
SRP54P61011 CCDC6-201ENST00000263102 5811 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SRP54P61011 IGFBP5-201ENST00000233813 6215 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SRP54P61011 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SRP54P61011 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
SRP54P61011 SYBU-207ENST00000433638 3104 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
SRP54P61011 PER2-201ENST00000254657 6385 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SRP54P61011 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SRP54P61011 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
SRP54P61011 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SRP54P61011 CHST10-203ENST00000409701 1338 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SRP54P61011 DBET-201ENST00000630918 3363 ntBASIC15.11■□□□□ 0.01
SRP54P61011 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
SRP54P61011 PTPN9-206ENST00000618819 7813 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 41 ms