Protein–RNA interactions for Protein: P55287

CDH11, Cadherin-11, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH11P55287 PHTF1-202ENST00000369598 3000 ntTSL 5 BASIC14.1□□□□□ -0.15
CDH11P55287 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC14.1□□□□□ -0.15
CDH11P55287 KATNBL1-201ENST00000256544 2723 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CDH11P55287 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CDH11P55287 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC14.1□□□□□ -0.15
CDH11P55287 FLII-201ENST00000327031 4338 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CDH11P55287 SYT9-201ENST00000318881 3955 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CDH11P55287 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
CDH11P55287 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
CDH11P55287 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC14.1□□□□□ -0.15
CDH11P55287 IRF4-201ENST00000380956 5331 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CDH11P55287 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC14.1□□□□□ -0.15
CDH11P55287 FGD2-201ENST00000274963 3046 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CDH11P55287 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC14.09□□□□□ -0.15
CDH11P55287 VARS2-211ENST00000541562 3566 ntTSL 2 BASIC14.09□□□□□ -0.15
CDH11P55287 CGN-201ENST00000271636 5091 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CDH11P55287 GOPC-201ENST00000052569 4590 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CDH11P55287 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC14.09□□□□□ -0.15
CDH11P55287 CETN4P-206ENST00000642099 2168 ntBASIC14.09□□□□□ -0.15
CDH11P55287 STARD8-202ENST00000374597 4820 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
CDH11P55287 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC14.09□□□□□ -0.15
CDH11P55287 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CDH11P55287 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CDH11P55287 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CDH11P55287 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CDH11P55287 B4GALT3-213ENST00000622395 2414 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CDH11P55287 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CDH11P55287 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CDH11P55287 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC14.09□□□□□ -0.15
CDH11P55287 KLK8-202ENST00000320838 456 ntTSL 5 BASIC14.09□□□□□ -0.15
CDH11P55287 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC14.09□□□□□ -0.15
CDH11P55287 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
CDH11P55287 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
CDH11P55287 FAM207CP-201ENST00000443486 507 ntBASIC14.09□□□□□ -0.15
CDH11P55287 COX20P2-201ENST00000452636 358 ntBASIC14.09□□□□□ -0.15
CDH11P55287 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CDH11P55287 OARD1-208ENST00000469104 704 ntTSL 2 BASIC14.09□□□□□ -0.15
CDH11P55287 SATB1-217ENST00000493952 626 ntTSL 3 BASIC14.09□□□□□ -0.15
CDH11P55287 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC14.09□□□□□ -0.15
CDH11P55287 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC14.09□□□□□ -0.15
CDH11P55287 POLD4-211ENST00000539074 714 ntTSL 3 BASIC14.09□□□□□ -0.15
CDH11P55287 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC14.09□□□□□ -0.15
CDH11P55287 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CDH11P55287 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC14.09□□□□□ -0.15
CDH11P55287 YTHDF3-AS1-201ENST00000603538 718 ntBASIC14.09□□□□□ -0.15
CDH11P55287 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC14.09□□□□□ -0.15
CDH11P55287 HFE2-206ENST00000634927 506 ntTSL 4 BASIC14.09□□□□□ -0.15
CDH11P55287 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
CDH11P55287 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC14.09□□□□□ -0.15
CDH11P55287 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC14.09□□□□□ -0.15
CDH11P55287 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC14.09□□□□□ -0.15
CDH11P55287 PRF1-201ENST00000373209 2492 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CDH11P55287 TTC7A-202ENST00000394850 4306 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
CDH11P55287 SLC38A5-212ENST00000619100 2100 ntTSL 2 BASIC14.09□□□□□ -0.15
CDH11P55287 SLC38A5-214ENST00000622196 2100 ntTSL 5 BASIC14.09□□□□□ -0.15
CDH11P55287 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CDH11P55287 DDX17-202ENST00000396821 4791 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
CDH11P55287 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CDH11P55287 STEAP2-202ENST00000394621 7033 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CDH11P55287 PKN1-202ENST00000342216 2960 ntTSL 2 BASIC14.09□□□□□ -0.15
CDH11P55287 WDR59-201ENST00000262144 5898 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
CDH11P55287 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CDH11P55287 ASPG-206ENST00000551177 4851 ntAPPRIS P2 TSL 1 (best) BASIC14.09□□□□□ -0.15
CDH11P55287 TNFSF13-201ENST00000338784 1971 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
CDH11P55287 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
CDH11P55287 XRCC1-201ENST00000262887 2802 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CDH11P55287 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CDH11P55287 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC14.09□□□□□ -0.15
CDH11P55287 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CDH11P55287 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC14.08□□□□□ -0.15
CDH11P55287 CTNS-202ENST00000381870 2470 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
CDH11P55287 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
CDH11P55287 KLF11-205ENST00000535335 4033 ntAPPRIS ALT2 TSL 2 BASIC14.08□□□□□ -0.15
CDH11P55287 PRSS8-201ENST00000317508 1872 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CDH11P55287 SLC13A5-203ENST00000433363 3435 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CDH11P55287 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC14.08□□□□□ -0.16
CDH11P55287 SLC4A7-210ENST00000440156 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
CDH11P55287 CDH23-201ENST00000224721 11139 ntAPPRIS P5 TSL 5 BASIC14.08□□□□□ -0.16
CDH11P55287 CDH23-214ENST00000622827 11122 ntAPPRIS ALT1 TSL 5 BASIC14.08□□□□□ -0.16
CDH11P55287 NRAS-201ENST00000369535 4449 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CDH11P55287 ZNF655-212ENST00000424881 4666 ntAPPRIS ALT2 TSL 2 BASIC14.08□□□□□ -0.16
CDH11P55287 IMPACT-201ENST00000284202 3792 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CDH11P55287 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC14.08□□□□□ -0.16
CDH11P55287 NYAP1-201ENST00000300179 3581 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
CDH11P55287 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC14.08□□□□□ -0.16
CDH11P55287 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CDH11P55287 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
CDH11P55287 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC14.08□□□□□ -0.16
CDH11P55287 RAC2-204ENST00000406508 893 ntTSL 5 BASIC14.08□□□□□ -0.16
CDH11P55287 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC14.08□□□□□ -0.16
CDH11P55287 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC14.08□□□□□ -0.16
CDH11P55287 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC14.08□□□□□ -0.16
CDH11P55287 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CDH11P55287 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
CDH11P55287 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC14.08□□□□□ -0.16
CDH11P55287 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
CDH11P55287 HLA-V-204ENST00000476601 1289 ntBASIC14.08□□□□□ -0.16
CDH11P55287 RN7SL204P-201ENST00000582831 262 ntBASIC14.08□□□□□ -0.16
CDH11P55287 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC14.08□□□□□ -0.16
CDH11P55287 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms