Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 GPAT2-202ENST00000434632 3061 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
NEK3P51956 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC15.82■□□□□ 0.12
NEK3P51956 PITPNM2-208ENST00000542749 6660 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
NEK3P51956 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC15.82■□□□□ 0.12
NEK3P51956 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
NEK3P51956 PRKX-201ENST00000262848 6031 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
NEK3P51956 ARHGEF6-202ENST00000370620 4764 ntTSL 2 BASIC15.82■□□□□ 0.12
NEK3P51956 TMEM38A-201ENST00000187762 2649 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
NEK3P51956 P2RX5-TAX1BP3-201ENST00000550383 5905 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
NEK3P51956 MYH14-210ENST00000601313 6896 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
NEK3P51956 UBE2J1-201ENST00000435041 4290 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
NEK3P51956 ESPNL-201ENST00000343063 4836 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
NEK3P51956 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
NEK3P51956 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
NEK3P51956 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
NEK3P51956 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
NEK3P51956 ZDHHC3-201ENST00000296127 3101 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
NEK3P51956 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
NEK3P51956 NSL1-201ENST00000366976 722 ntTSL 2 BASIC15.81■□□□□ 0.12
NEK3P51956 RABIF-201ENST00000367262 2430 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
NEK3P51956 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC15.81■□□□□ 0.12
NEK3P51956 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
NEK3P51956 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
NEK3P51956 AL512384.1-201ENST00000406683 331 ntBASIC15.81■□□□□ 0.12
NEK3P51956 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
NEK3P51956 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
NEK3P51956 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
NEK3P51956 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
NEK3P51956 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC15.81■□□□□ 0.12
NEK3P51956 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC15.81■□□□□ 0.12
NEK3P51956 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC15.81■□□□□ 0.12
NEK3P51956 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
NEK3P51956 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC15.81■□□□□ 0.12
NEK3P51956 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
NEK3P51956 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC15.81■□□□□ 0.12
NEK3P51956 NEU3-203ENST00000529024 581 ntTSL 3 BASIC15.81■□□□□ 0.12
NEK3P51956 AC092552.1-201ENST00000547243 906 ntBASIC15.81■□□□□ 0.12
NEK3P51956 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC15.81■□□□□ 0.12
NEK3P51956 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC15.81■□□□□ 0.12
NEK3P51956 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
NEK3P51956 CMC2-214ENST00000565925 640 ntTSL 5 BASIC15.81■□□□□ 0.12
NEK3P51956 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC15.81■□□□□ 0.12
NEK3P51956 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC15.81■□□□□ 0.12
NEK3P51956 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC15.81■□□□□ 0.12
NEK3P51956 WFDC1-204ENST00000613603 549 ntBASIC15.81■□□□□ 0.12
NEK3P51956 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC15.81■□□□□ 0.12
NEK3P51956 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC15.81■□□□□ 0.12
NEK3P51956 ABCG4-205ENST00000619701 3852 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
NEK3P51956 FAM186B-201ENST00000257894 2944 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
NEK3P51956 LINC00667-206ENST00000582363 2935 ntTSL 2 BASIC15.81■□□□□ 0.12
NEK3P51956 GRK6-203ENST00000393576 2792 ntTSL 5 BASIC15.81■□□□□ 0.12
NEK3P51956 AL353997.2-201ENST00000579352 4955 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
NEK3P51956 AJ011931.1-201ENST00000618749 2492 ntBASIC15.8■□□□□ 0.12
NEK3P51956 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC15.8■□□□□ 0.12
NEK3P51956 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
NEK3P51956 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
NEK3P51956 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
NEK3P51956 SLCO5A1-201ENST00000260126 9076 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
NEK3P51956 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
NEK3P51956 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
NEK3P51956 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
NEK3P51956 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC15.8■□□□□ 0.12
NEK3P51956 AHDC1-201ENST00000247087 6334 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
NEK3P51956 XRCC1-201ENST00000262887 2802 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
NEK3P51956 RB1CC1-202ENST00000435644 6614 ntAPPRIS ALT1 TSL 1 (best) BASIC15.8■□□□□ 0.12
NEK3P51956 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC15.8■□□□□ 0.12
NEK3P51956 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
NEK3P51956 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
NEK3P51956 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
NEK3P51956 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
NEK3P51956 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC15.8■□□□□ 0.12
NEK3P51956 FAM86LP-201ENST00000478302 853 ntBASIC15.8■□□□□ 0.12
NEK3P51956 GIMAP3P-201ENST00000495150 836 ntBASIC15.8■□□□□ 0.12
NEK3P51956 NAA50-208ENST00000497255 789 ntTSL 5 BASIC15.8■□□□□ 0.12
NEK3P51956 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC15.8■□□□□ 0.12
NEK3P51956 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
NEK3P51956 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC15.8■□□□□ 0.12
NEK3P51956 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC15.8■□□□□ 0.12
NEK3P51956 AC124287.1-201ENST00000582249 838 ntTSL 3 BASIC15.8■□□□□ 0.12
NEK3P51956 AC004477.1-202ENST00000584428 539 ntTSL 2 BASIC15.8■□□□□ 0.12
NEK3P51956 IGHV3-72-202ENST00000621503 303 ntBASIC15.8■□□□□ 0.12
NEK3P51956 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
NEK3P51956 SYT5-201ENST00000354308 3792 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
NEK3P51956 NRG2-209ENST00000541337 3723 ntTSL 5 BASIC15.8■□□□□ 0.12
NEK3P51956 GAD2-201ENST00000259271 2462 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
NEK3P51956 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
NEK3P51956 PTK7-210ENST00000471863 2412 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
NEK3P51956 AC004706.4-201ENST00000634965 3537 ntAPPRIS P1 BASIC15.8■□□□□ 0.12
NEK3P51956 SNX14-202ENST00000346348 3348 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
NEK3P51956 SLC2A11-203ENST00000345044 3219 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
NEK3P51956 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
NEK3P51956 ATXN10-202ENST00000381061 3135 ntTSL 2 BASIC15.8■□□□□ 0.12
NEK3P51956 HCFC1-201ENST00000310441 8869 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
NEK3P51956 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
NEK3P51956 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC15.8■□□□□ 0.12
NEK3P51956 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
NEK3P51956 ZNF804B-201ENST00000333190 4659 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
NEK3P51956 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
NEK3P51956 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
NEK3P51956 UBR5-207ENST00000520539 10297 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 36.9 ms