Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 UBAP1-202ENST00000359544 2535 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
SOX2P48431 NFATC4-219ENST00000555167 4364 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
SOX2P48431 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC13.54□□□□□ -0.24
SOX2P48431 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
SOX2P48431 SAFB-201ENST00000292123 3042 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
SOX2P48431 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC13.54□□□□□ -0.24
SOX2P48431 AC005523.2-201ENST00000601192 3568 ntTSL 4 BASIC13.54□□□□□ -0.24
SOX2P48431 KIAA0930-203ENST00000391627 2623 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
SOX2P48431 LTB4R-203ENST00000396789 4110 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
SOX2P48431 KIRREL1-204ENST00000368173 7519 ntTSL 2 BASIC13.54□□□□□ -0.24
SOX2P48431 MLST8-201ENST00000301724 1735 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
SOX2P48431 C4B-201ENST00000425700 5237 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
SOX2P48431 MAN1B1-202ENST00000371589 2769 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
SOX2P48431 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
SOX2P48431 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC13.54□□□□□ -0.24
SOX2P48431 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
SOX2P48431 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC13.54□□□□□ -0.24
SOX2P48431 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
SOX2P48431 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC13.54□□□□□ -0.24
SOX2P48431 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
SOX2P48431 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC13.54□□□□□ -0.24
SOX2P48431 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC13.54□□□□□ -0.24
SOX2P48431 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
SOX2P48431 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC13.54□□□□□ -0.24
SOX2P48431 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
SOX2P48431 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC13.54□□□□□ -0.24
SOX2P48431 AC106730.1-201ENST00000566722 1090 ntBASIC13.54□□□□□ -0.24
SOX2P48431 AC105021.1-202ENST00000570572 669 ntBASIC13.54□□□□□ -0.24
SOX2P48431 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC13.54□□□□□ -0.24
SOX2P48431 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC13.54□□□□□ -0.24
SOX2P48431 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC13.54□□□□□ -0.24
SOX2P48431 CITED2-204ENST00000618718 901 ntTSL 2 BASIC13.54□□□□□ -0.24
SOX2P48431 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
SOX2P48431 CMTR2-201ENST00000338099 4869 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
SOX2P48431 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
SOX2P48431 CMTM6-201ENST00000205636 3863 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
SOX2P48431 RTF1-201ENST00000389629 5021 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
SOX2P48431 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
SOX2P48431 HTR3A-205ENST00000504030 2432 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
SOX2P48431 ATE1-202ENST00000369040 4803 ntTSL 2 BASIC13.54□□□□□ -0.24
SOX2P48431 RGS9-202ENST00000443584 2078 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
SOX2P48431 NXF1-213ENST00000532297 2795 ntAPPRIS P1 TSL 5 BASIC13.54□□□□□ -0.24
SOX2P48431 ZSCAN32-215ENST00000618425 2788 ntTSL 2 BASIC13.54□□□□□ -0.24
SOX2P48431 RNF170-209ENST00000534961 4116 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
SOX2P48431 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC13.53□□□□□ -0.24
SOX2P48431 NFIC-206ENST00000589123 8068 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
SOX2P48431 G3BP2-202ENST00000359707 4883 ntAPPRIS P4 TSL 1 (best) BASIC13.53□□□□□ -0.24
SOX2P48431 S1PR2-201ENST00000590320 3582 ntAPPRIS P1 TSL 3 BASIC13.53□□□□□ -0.24
SOX2P48431 TCOF1-202ENST00000377797 5095 ntAPPRIS ALT2 TSL 5 BASIC13.53□□□□□ -0.24
SOX2P48431 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
SOX2P48431 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
SOX2P48431 TAB1-201ENST00000216160 3237 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
SOX2P48431 PXDN-201ENST00000252804 6808 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
SOX2P48431 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC13.53□□□□□ -0.24
SOX2P48431 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
SOX2P48431 MBD1-212ENST00000585672 2532 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
SOX2P48431 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
SOX2P48431 DFNA5-201ENST00000342947 2590 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
SOX2P48431 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC13.53□□□□□ -0.24
SOX2P48431 COQ7-209ENST00000569127 2575 ntTSL 2 BASIC13.53□□□□□ -0.24
SOX2P48431 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC13.53□□□□□ -0.24
SOX2P48431 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC13.53□□□□□ -0.24
SOX2P48431 NEDD4L-238ENST00000635997 4402 ntTSL 5 BASIC13.53□□□□□ -0.24
SOX2P48431 FAM219A-209ENST00000445726 3644 ntAPPRIS ALT1 TSL 2 BASIC13.53□□□□□ -0.24
SOX2P48431 PRSS30P-203ENST00000476276 2855 ntTSL 2 BASIC13.53□□□□□ -0.24
SOX2P48431 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
SOX2P48431 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
SOX2P48431 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC13.53□□□□□ -0.24
SOX2P48431 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC13.53□□□□□ -0.24
SOX2P48431 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC13.53□□□□□ -0.24
SOX2P48431 YBX2P1-201ENST00000394192 760 ntBASIC13.53□□□□□ -0.24
SOX2P48431 RBM39-205ENST00000397370 612 ntTSL 2 BASIC13.53□□□□□ -0.24
SOX2P48431 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
SOX2P48431 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC13.53□□□□□ -0.24
SOX2P48431 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC13.53□□□□□ -0.24
SOX2P48431 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
SOX2P48431 CMC2-214ENST00000565925 640 ntTSL 5 BASIC13.53□□□□□ -0.24
SOX2P48431 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC13.53□□□□□ -0.24
SOX2P48431 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC13.53□□□□□ -0.24
SOX2P48431 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC13.53□□□□□ -0.24
SOX2P48431 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC13.53□□□□□ -0.24
SOX2P48431 AC120114.3-201ENST00000611923 658 ntBASIC13.53□□□□□ -0.24
SOX2P48431 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC13.53□□□□□ -0.24
SOX2P48431 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
SOX2P48431 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC13.53□□□□□ -0.24
SOX2P48431 ZBTB1-201ENST00000358738 4119 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
SOX2P48431 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC13.53□□□□□ -0.24
SOX2P48431 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
SOX2P48431 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
SOX2P48431 SLC43A2-201ENST00000301335 8136 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
SOX2P48431 ALDOA-203ENST00000395248 2447 ntTSL 5 BASIC13.53□□□□□ -0.24
SOX2P48431 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC13.53□□□□□ -0.24
SOX2P48431 RSPH9-201ENST00000372163 2534 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
SOX2P48431 MAOB-201ENST00000378069 2566 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
SOX2P48431 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
SOX2P48431 GPANK1-205ENST00000375906 2793 ntAPPRIS P1 TSL 2 BASIC13.53□□□□□ -0.24
SOX2P48431 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC13.53□□□□□ -0.24
SOX2P48431 ARHGAP9-213ENST00000550288 2818 ntTSL 2 BASIC13.53□□□□□ -0.24
SOX2P48431 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC13.53□□□□□ -0.24
SOX2P48431 SEZ6L-202ENST00000343706 2898 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 35.8 ms