Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
SCN4AP35499 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
SCN4AP35499 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC17.52■□□□□ 0.39
SCN4AP35499 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
SCN4AP35499 CCNH-201ENST00000256897 1378 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
SCN4AP35499 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
SCN4AP35499 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC17.52■□□□□ 0.39
SCN4AP35499 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
SCN4AP35499 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
SCN4AP35499 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.39
SCN4AP35499 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC17.51■□□□□ 0.39
SCN4AP35499 AC108734.2-201ENST00000420887 1069 ntBASIC17.51■□□□□ 0.39
SCN4AP35499 KRT18P46-201ENST00000435568 1279 ntBASIC17.51■□□□□ 0.39
SCN4AP35499 HVCN1-203ENST00000439744 1215 ntTSL 2 BASIC17.51■□□□□ 0.39
SCN4AP35499 RPL3P5-201ENST00000441645 1232 ntBASIC17.51■□□□□ 0.39
SCN4AP35499 AC097103.2-201ENST00000504670 602 ntTSL 2 BASIC17.51■□□□□ 0.39
SCN4AP35499 ANO1-AS2-202ENST00000533327 498 ntTSL 3 BASIC17.51■□□□□ 0.39
SCN4AP35499 TMEM14C-205ENST00000541412 1177 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
SCN4AP35499 AC010186.1-201ENST00000546259 532 ntTSL 2 BASIC17.51■□□□□ 0.39
SCN4AP35499 AC010422.5-201ENST00000597961 585 ntAPPRIS P1 TSL 4 BASIC17.51■□□□□ 0.39
SCN4AP35499 LINC02018-201ENST00000608169 1268 ntTSL 4 BASIC17.51■□□□□ 0.39
SCN4AP35499 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SCN4AP35499 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
SCN4AP35499 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC17.51■□□□□ 0.39
SCN4AP35499 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
SCN4AP35499 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC17.51■□□□□ 0.39
SCN4AP35499 AC009090.5-201ENST00000624886 2285 ntBASIC17.51■□□□□ 0.39
SCN4AP35499 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SCN4AP35499 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC17.51■□□□□ 0.39
SCN4AP35499 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
SCN4AP35499 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC17.51■□□□□ 0.39
SCN4AP35499 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC17.51■□□□□ 0.39
SCN4AP35499 ATF4-203ENST00000404241 1910 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
SCN4AP35499 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC17.51■□□□□ 0.39
SCN4AP35499 FOS-201ENST00000303562 2158 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SCN4AP35499 KRT17P5-201ENST00000332088 839 ntBASIC17.51■□□□□ 0.39
SCN4AP35499 LIMS1-201ENST00000332345 1235 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
SCN4AP35499 ATP5S-203ENST00000358473 801 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
SCN4AP35499 CELP-201ENST00000411440 1249 ntTSL 5 BASIC17.51■□□□□ 0.39
SCN4AP35499 AL451105.2-201ENST00000413763 1234 ntTSL 5 BASIC17.51■□□□□ 0.39
SCN4AP35499 CCL24-202ENST00000416943 585 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SCN4AP35499 CSNK1G2P1-201ENST00000442675 955 ntBASIC17.51■□□□□ 0.39
SCN4AP35499 SHANK2-210ENST00000449116 939 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
SCN4AP35499 SNHG14-209ENST00000456576 544 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
SCN4AP35499 AC109479.3-201ENST00000520163 360 ntTSL 3 BASIC17.51■□□□□ 0.39
SCN4AP35499 RN7SL357P-201ENST00000581065 298 ntBASIC17.51■□□□□ 0.39
SCN4AP35499 AC007250.1-201ENST00000608934 338 ntBASIC17.51■□□□□ 0.39
SCN4AP35499 ST5-261ENST00000626808 1071 ntTSL 5 BASIC17.51■□□□□ 0.39
SCN4AP35499 PROX1-AS1-235ENST00000628896 711 ntTSL 5 BASIC17.51■□□□□ 0.39
SCN4AP35499 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SCN4AP35499 ERCC1-208ENST00000589165 1453 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
SCN4AP35499 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SCN4AP35499 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
SCN4AP35499 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
SCN4AP35499 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC17.51■□□□□ 0.39
SCN4AP35499 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
SCN4AP35499 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
SCN4AP35499 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC17.5■□□□□ 0.39
SCN4AP35499 PORCN-201ENST00000326194 1755 ntAPPRIS P4 TSL 1 (best) BASIC17.5■□□□□ 0.39
SCN4AP35499 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SCN4AP35499 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC17.5■□□□□ 0.39
SCN4AP35499 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SCN4AP35499 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SCN4AP35499 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
SCN4AP35499 CD1E-206ENST00000368161 1689 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
SCN4AP35499 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
SCN4AP35499 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC17.5■□□□□ 0.39
SCN4AP35499 AC012508.2-201ENST00000567613 1472 ntBASIC17.5■□□□□ 0.39
SCN4AP35499 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC17.5■□□□□ 0.39
SCN4AP35499 KCNE1-203ENST00000399286 1204 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SCN4AP35499 MIR1301-201ENST00000408518 82 ntBASIC17.5■□□□□ 0.39
SCN4AP35499 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC17.5■□□□□ 0.39
SCN4AP35499 AP001062.3-202ENST00000444409 619 ntTSL 2 BASIC17.5■□□□□ 0.39
SCN4AP35499 LINC01056-201ENST00000455711 1234 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
SCN4AP35499 SCARNA12-201ENST00000459155 270 ntBASIC17.5■□□□□ 0.39
SCN4AP35499 LRRC75A-AS1-213ENST00000484836 821 ntTSL 2 BASIC17.5■□□□□ 0.39
SCN4AP35499 AC112487.1-201ENST00000498032 1097 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
SCN4AP35499 AC022858.1-202ENST00000521084 393 ntTSL 3 BASIC17.5■□□□□ 0.39
SCN4AP35499 RAP1B-216ENST00000537460 1072 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
SCN4AP35499 POLR2E-204ENST00000586746 1096 ntAPPRIS P1 TSL 3 BASIC17.5■□□□□ 0.39
SCN4AP35499 AC006483.2-201ENST00000609813 515 ntBASIC17.5■□□□□ 0.39
SCN4AP35499 AQP7-213ENST00000624075 1270 ntTSL 2 BASIC17.5■□□□□ 0.39
SCN4AP35499 AC106774.7-201ENST00000638408 597 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
SCN4AP35499 AC106774.6-201ENST00000638483 597 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
SCN4AP35499 AC233724.20-201ENST00000638842 597 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
SCN4AP35499 AC233724.19-201ENST00000639969 597 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
SCN4AP35499 AC106774.5-201ENST00000640558 597 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
SCN4AP35499 AC233724.18-201ENST00000640803 597 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
SCN4AP35499 AC233724.21-201ENST00000640846 597 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
SCN4AP35499 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC17.5■□□□□ 0.39
SCN4AP35499 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SCN4AP35499 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
SCN4AP35499 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC17.5■□□□□ 0.39
SCN4AP35499 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SCN4AP35499 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC17.5■□□□□ 0.39
SCN4AP35499 SLC50A1-203ENST00000368404 1300 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SCN4AP35499 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC17.5■□□□□ 0.39
SCN4AP35499 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
SCN4AP35499 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SCN4AP35499 API5-208ENST00000531273 1868 ntTSL 2 BASIC17.5■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 38.1 ms