Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 NRM-202ENST00000376420 1228 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
HOXC9P31274 TSPO-203ENST00000396265 1075 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
HOXC9P31274 HNRNPA1P41-201ENST00000397777 928 ntBASIC19.95■□□□□ 0.78
HOXC9P31274 LIMS1-206ENST00000414829 439 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
HOXC9P31274 AC106047.1-202ENST00000467484 482 ntTSL 2 BASIC19.95■□□□□ 0.78
HOXC9P31274 LIMS3-205ENST00000487150 782 ntTSL 3 BASIC19.95■□□□□ 0.78
HOXC9P31274 KLF3-AS1-204ENST00000505240 567 ntTSL 4 BASIC19.95■□□□□ 0.78
HOXC9P31274 ALG3P1-201ENST00000508806 1114 ntBASIC19.95■□□□□ 0.78
HOXC9P31274 SCARNA21-201ENST00000517026 139 ntBASIC19.95■□□□□ 0.78
HOXC9P31274 TP53AIP1-204ENST00000530777 363 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
HOXC9P31274 AC117500.3-201ENST00000537032 666 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
HOXC9P31274 LINC01229-204ENST00000568751 720 ntTSL 3 BASIC19.95■□□□□ 0.78
HOXC9P31274 MT1H-202ENST00000569155 697 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
HOXC9P31274 AC020922.3-201ENST00000595064 547 ntBASIC19.95■□□□□ 0.78
HOXC9P31274 ALG1L-202ENST00000611639 701 ntAPPRIS ALT2 TSL 3 BASIC19.95■□□□□ 0.78
HOXC9P31274 AL353770.1-201ENST00000614915 403 ntBASIC19.95■□□□□ 0.78
HOXC9P31274 Metazoa_SRP.69-201ENST00000615730 281 ntBASIC19.95■□□□□ 0.78
HOXC9P31274 KLF3-AS1-207ENST00000620339 558 ntTSL 4 BASIC19.95■□□□□ 0.78
HOXC9P31274 CDK7-214ENST00000626796 358 ntTSL 5 BASIC19.95■□□□□ 0.78
HOXC9P31274 CDK7-215ENST00000629350 1149 ntTSL 5 BASIC19.95■□□□□ 0.78
HOXC9P31274 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
HOXC9P31274 WAC-202ENST00000347934 2839 ntTSL 5 BASIC19.95■□□□□ 0.78
HOXC9P31274 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
HOXC9P31274 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC19.95■□□□□ 0.78
HOXC9P31274 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC19.95■□□□□ 0.78
HOXC9P31274 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
HOXC9P31274 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
HOXC9P31274 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
HOXC9P31274 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
HOXC9P31274 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC19.95■□□□□ 0.78
HOXC9P31274 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC19.95■□□□□ 0.78
HOXC9P31274 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
HOXC9P31274 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
HOXC9P31274 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC19.94■□□□□ 0.78
HOXC9P31274 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
HOXC9P31274 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
HOXC9P31274 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
HOXC9P31274 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
HOXC9P31274 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
HOXC9P31274 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC19.94■□□□□ 0.78
HOXC9P31274 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC19.94■□□□□ 0.78
HOXC9P31274 HLA-DQB2-231ENST00000435145 2026 ntBASIC19.94■□□□□ 0.78
HOXC9P31274 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC19.94■□□□□ 0.78
HOXC9P31274 RPL35-201ENST00000348462 455 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
HOXC9P31274 AC073316.1-202ENST00000402115 988 ntTSL 5 BASIC19.94■□□□□ 0.78
HOXC9P31274 TLE1P1-201ENST00000422965 589 ntBASIC19.94■□□□□ 0.78
HOXC9P31274 AC012441.2-201ENST00000444843 739 ntBASIC19.94■□□□□ 0.78
HOXC9P31274 GLIS3-AS1-201ENST00000451340 734 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
HOXC9P31274 AC012507.1-201ENST00000454890 600 ntTSL 4 BASIC19.94■□□□□ 0.78
HOXC9P31274 RPS2P36-201ENST00000456516 831 ntBASIC19.94■□□□□ 0.78
HOXC9P31274 AC008443.1-201ENST00000511331 1000 ntTSL 3 BASIC19.94■□□□□ 0.78
HOXC9P31274 PGRMC2-206ENST00000512483 1144 ntTSL 5 BASIC19.94■□□□□ 0.78
HOXC9P31274 AC116345.2-201ENST00000512837 523 ntBASIC19.94■□□□□ 0.78
HOXC9P31274 PAM16-211ENST00000575848 518 ntTSL 3 BASIC19.94■□□□□ 0.78
HOXC9P31274 PAM16-214ENST00000576217 493 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
HOXC9P31274 AC005962.1-201ENST00000584100 773 ntBASIC19.94■□□□□ 0.78
HOXC9P31274 AC090386.1-202ENST00000586610 469 ntTSL 3 BASIC19.94■□□□□ 0.78
HOXC9P31274 AC008805.1-201ENST00000590892 364 ntBASIC19.94■□□□□ 0.78
HOXC9P31274 SPCS2P2-201ENST00000603270 608 ntBASIC19.94■□□□□ 0.78
HOXC9P31274 LINC01517-203ENST00000616194 908 ntTSL 5 BASIC19.94■□□□□ 0.78
HOXC9P31274 AP001043.1-205ENST00000623098 1033 ntTSL 5 BASIC19.94■□□□□ 0.78
HOXC9P31274 RPL35-206ENST00000629845 340 ntTSL 5 BASIC19.94■□□□□ 0.78
HOXC9P31274 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
HOXC9P31274 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
HOXC9P31274 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC19.94■□□□□ 0.78
HOXC9P31274 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC19.94■□□□□ 0.78
HOXC9P31274 UROD-201ENST00000246337 1300 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
HOXC9P31274 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
HOXC9P31274 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
HOXC9P31274 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
HOXC9P31274 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
HOXC9P31274 AC023024.2-201ENST00000623561 1993 ntBASIC19.94■□□□□ 0.78
HOXC9P31274 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
HOXC9P31274 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC19.93■□□□□ 0.78
HOXC9P31274 SLC13A5-208ENST00000573648 1723 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
HOXC9P31274 CERS3-202ENST00000394113 2045 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
HOXC9P31274 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
HOXC9P31274 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC19.93■□□□□ 0.78
HOXC9P31274 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
HOXC9P31274 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
HOXC9P31274 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
HOXC9P31274 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC19.93■□□□□ 0.78
HOXC9P31274 RMND1-202ENST00000367303 1854 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
HOXC9P31274 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
HOXC9P31274 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
HOXC9P31274 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
HOXC9P31274 ETV2-201ENST00000379023 926 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
HOXC9P31274 UFM1-202ENST00000379649 846 ntTSL 4 BASIC19.93■□□□□ 0.78
HOXC9P31274 AC245369.1-201ENST00000390634 434 ntAPPRIS P1 BASIC19.93■□□□□ 0.78
HOXC9P31274 AL391832.2-201ENST00000418557 889 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
HOXC9P31274 LINC02158-201ENST00000432377 897 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
HOXC9P31274 MAGEA5-201ENST00000446757 942 ntBASIC19.93■□□□□ 0.78
HOXC9P31274 AL139412.1-202ENST00000452465 675 ntTSL 3 BASIC19.93■□□□□ 0.78
HOXC9P31274 AC010973.2-201ENST00000485974 1230 ntTSL 2 BASIC19.93■□□□□ 0.78
HOXC9P31274 AC124301.1-201ENST00000524885 602 ntTSL 3 BASIC19.93■□□□□ 0.78
HOXC9P31274 NAPSB-201ENST00000525179 678 ntTSL 3 BASIC19.93■□□□□ 0.78
HOXC9P31274 CENPX-208ENST00000584347 799 ntTSL 2 BASIC19.93■□□□□ 0.78
HOXC9P31274 AC105105.3-201ENST00000585470 646 ntTSL 5 BASIC19.93■□□□□ 0.78
HOXC9P31274 AC011498.6-201ENST00000592034 510 ntTSL 5 BASIC19.93■□□□□ 0.78
HOXC9P31274 AC008763.2-203ENST00000595866 762 ntAPPRIS ALT2 TSL 5 BASIC19.93■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms