Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC11.73□□□□□ -0.53
HLA-DMBP28068 IMPDH1-201ENST00000338791 2881 ntTSL 2 BASIC11.73□□□□□ -0.53
HLA-DMBP28068 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC11.73□□□□□ -0.53
HLA-DMBP28068 PCDHA7-201ENST00000356878 2922 ntAPPRIS ALT2 BASIC11.73□□□□□ -0.53
HLA-DMBP28068 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC11.73□□□□□ -0.53
HLA-DMBP28068 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC11.73□□□□□ -0.53
HLA-DMBP28068 ARFGAP1-203ENST00000370283 3281 ntAPPRIS ALT2 TSL 1 (best) BASIC11.73□□□□□ -0.53
HLA-DMBP28068 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC11.73□□□□□ -0.53
HLA-DMBP28068 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
HLA-DMBP28068 ACSL3-202ENST00000392066 3147 ntAPPRIS P1 TSL 5 BASIC11.73□□□□□ -0.53
HLA-DMBP28068 BAD-202ENST00000394531 631 ntTSL 3 BASIC11.73□□□□□ -0.53
HLA-DMBP28068 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC11.73□□□□□ -0.53
HLA-DMBP28068 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC11.73□□□□□ -0.53
HLA-DMBP28068 FAM8A3P-201ENST00000427218 844 ntBASIC11.73□□□□□ -0.53
HLA-DMBP28068 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC11.73□□□□□ -0.53
HLA-DMBP28068 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC11.73□□□□□ -0.53
HLA-DMBP28068 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
HLA-DMBP28068 USP40-206ENST00000443711 628 ntTSL 2 BASIC11.73□□□□□ -0.53
HLA-DMBP28068 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC11.73□□□□□ -0.53
HLA-DMBP28068 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC11.73□□□□□ -0.53
HLA-DMBP28068 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
HLA-DMBP28068 SATB1-217ENST00000493952 626 ntTSL 3 BASIC11.73□□□□□ -0.53
HLA-DMBP28068 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
HLA-DMBP28068 HOXA-AS2-202ENST00000517635 2455 ntTSL 2 BASIC11.73□□□□□ -0.53
HLA-DMBP28068 IGHV3-42-201ENST00000520410 361 ntBASIC11.73□□□□□ -0.53
HLA-DMBP28068 USP47-207ENST00000527733 4525 ntAPPRIS P3 TSL 1 (best) BASIC11.73□□□□□ -0.53
HLA-DMBP28068 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC11.73□□□□□ -0.53
HLA-DMBP28068 RPTOR-202ENST00000544334 5734 ntTSL 5 BASIC11.73□□□□□ -0.53
HLA-DMBP28068 BAD-207ENST00000544785 525 ntTSL 3 BASIC11.73□□□□□ -0.53
HLA-DMBP28068 C15orf52-206ENST00000559313 3022 ntAPPRIS P2 TSL 5 BASIC11.73□□□□□ -0.53
HLA-DMBP28068 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC11.73□□□□□ -0.53
HLA-DMBP28068 WASH3P-207ENST00000560956 1394 ntBASIC11.73□□□□□ -0.53
HLA-DMBP28068 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
HLA-DMBP28068 KIAA0895L-202ENST00000561621 3500 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
HLA-DMBP28068 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC11.73□□□□□ -0.53
HLA-DMBP28068 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC11.73□□□□□ -0.53
HLA-DMBP28068 PRR29-209ENST00000582540 967 ntTSL 2 BASIC11.73□□□□□ -0.53
HLA-DMBP28068 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC11.73□□□□□ -0.53
HLA-DMBP28068 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC11.73□□□□□ -0.53
HLA-DMBP28068 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC11.73□□□□□ -0.53
HLA-DMBP28068 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC11.73□□□□□ -0.53
HLA-DMBP28068 AC005498.2-205ENST00000593218 784 ntBASIC11.73□□□□□ -0.53
HLA-DMBP28068 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC11.73□□□□□ -0.53
HLA-DMBP28068 SLC1A7-206ENST00000620347 2873 ntAPPRIS ALT2 TSL 1 (best) BASIC11.73□□□□□ -0.53
HLA-DMBP28068 FO538757.1-201ENST00000623083 1397 ntBASIC11.73□□□□□ -0.53
HLA-DMBP28068 IMPDH1-217ENST00000626419 2862 ntAPPRIS ALT1 TSL 5 BASIC11.73□□□□□ -0.53
HLA-DMBP28068 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC11.73□□□□□ -0.53
HLA-DMBP28068 KDM3A-203ENST00000409556 4928 ntAPPRIS P1 TSL 5 BASIC11.73□□□□□ -0.53
HLA-DMBP28068 C16orf52-202ENST00000542527 4360 ntAPPRIS P1 TSL 5 BASIC11.73□□□□□ -0.53
HLA-DMBP28068 RSPRY1-202ENST00000537866 3586 ntAPPRIS P1 TSL 2 BASIC11.73□□□□□ -0.53
HLA-DMBP28068 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC11.73□□□□□ -0.53
HLA-DMBP28068 LINC00667-206ENST00000582363 2935 ntTSL 2 BASIC11.73□□□□□ -0.53
HLA-DMBP28068 WASH2P-202ENST00000538033 2800 ntTSL 2 BASIC11.73□□□□□ -0.53
HLA-DMBP28068 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC11.72□□□□□ -0.53
HLA-DMBP28068 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
HLA-DMBP28068 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC11.72□□□□□ -0.53
HLA-DMBP28068 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC11.72□□□□□ -0.53
HLA-DMBP28068 GLUL-203ENST00000339526 3942 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
HLA-DMBP28068 KIAA1211L-201ENST00000397899 3907 ntAPPRIS P2 TSL 1 (best) BASIC11.72□□□□□ -0.53
HLA-DMBP28068 AMIGO2-201ENST00000266581 3763 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
HLA-DMBP28068 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
HLA-DMBP28068 TLL1-201ENST00000061240 6708 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
HLA-DMBP28068 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC11.72□□□□□ -0.53
HLA-DMBP28068 ABTB2-201ENST00000435224 4902 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
HLA-DMBP28068 HOXC11-202ENST00000546378 3261 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
HLA-DMBP28068 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
HLA-DMBP28068 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
HLA-DMBP28068 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC11.72□□□□□ -0.53
HLA-DMBP28068 MTA1-202ENST00000405646 2709 ntAPPRIS ALT2 TSL 5 BASIC11.72□□□□□ -0.53
HLA-DMBP28068 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
HLA-DMBP28068 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC11.72□□□□□ -0.53
HLA-DMBP28068 AL080243.2-201ENST00000418783 582 ntBASIC11.72□□□□□ -0.53
HLA-DMBP28068 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC11.72□□□□□ -0.53
HLA-DMBP28068 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC11.72□□□□□ -0.53
HLA-DMBP28068 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
HLA-DMBP28068 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC11.72□□□□□ -0.53
HLA-DMBP28068 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC11.72□□□□□ -0.53
HLA-DMBP28068 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC11.72□□□□□ -0.53
HLA-DMBP28068 SLED1-202ENST00000512051 380 ntBASIC11.72□□□□□ -0.53
HLA-DMBP28068 RNA5SP421-201ENST00000516864 134 ntBASIC11.72□□□□□ -0.53
HLA-DMBP28068 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC11.72□□□□□ -0.53
HLA-DMBP28068 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
HLA-DMBP28068 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
HLA-DMBP28068 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC11.72□□□□□ -0.53
HLA-DMBP28068 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC11.72□□□□□ -0.53
HLA-DMBP28068 AC051619.7-201ENST00000568314 623 ntBASIC11.72□□□□□ -0.53
HLA-DMBP28068 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC11.72□□□□□ -0.53
HLA-DMBP28068 LINC01115-203ENST00000606068 577 ntBASIC11.72□□□□□ -0.53
HLA-DMBP28068 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
HLA-DMBP28068 ABCC10-201ENST00000244533 5088 ntAPPRIS P3 TSL 1 (best) BASIC11.72□□□□□ -0.53
HLA-DMBP28068 PLEKHO2-201ENST00000323544 3720 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
HLA-DMBP28068 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC11.72□□□□□ -0.53
HLA-DMBP28068 ADGRG2-207ENST00000379869 4768 ntAPPRIS ALT2 TSL 1 (best) BASIC11.72□□□□□ -0.53
HLA-DMBP28068 DUSP27-201ENST00000271385 3597 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
HLA-DMBP28068 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
HLA-DMBP28068 AC140479.7-201ENST00000636301 2332 ntBASIC11.72□□□□□ -0.53
HLA-DMBP28068 TFE3-201ENST00000315869 3415 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
HLA-DMBP28068 WASHC2A-202ENST00000314664 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC11.72□□□□□ -0.53
HLA-DMBP28068 AC005089.1-201ENST00000619486 2241 ntBASIC11.72□□□□□ -0.53
HLA-DMBP28068 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC11.72□□□□□ -0.53
Retrieved 100 of 98,524 protein–RNA pairs in 46.9 ms