Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
HOXD4P09016 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC13.95□□□□□ -0.18
HOXD4P09016 STARD4-205ENST00000505803 803 ntAPPRIS P1 TSL 2 BASIC13.95□□□□□ -0.18
HOXD4P09016 STARD4-207ENST00000509887 1186 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
HOXD4P09016 MFF-223ENST00000524634 647 ntTSL 2 BASIC13.95□□□□□ -0.18
HOXD4P09016 EHF-205ENST00000527935 557 ntTSL 2 BASIC13.95□□□□□ -0.18
HOXD4P09016 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC13.95□□□□□ -0.18
HOXD4P09016 IFT20-214ENST00000585089 1071 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
HOXD4P09016 RPS24-214ENST00000613865 538 ntTSL 5 BASIC13.95□□□□□ -0.18
HOXD4P09016 ANXA2R-202ENST00000616064 1265 ntAPPRIS P1 BASIC13.95□□□□□ -0.18
HOXD4P09016 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC13.95□□□□□ -0.18
HOXD4P09016 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
HOXD4P09016 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC13.95□□□□□ -0.18
HOXD4P09016 PRRT2-202ENST00000358758 2567 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
HOXD4P09016 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
HOXD4P09016 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC13.95□□□□□ -0.18
HOXD4P09016 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
HOXD4P09016 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
HOXD4P09016 NRG1-202ENST00000356819 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
HOXD4P09016 SNX14-202ENST00000346348 3348 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
HOXD4P09016 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC13.95□□□□□ -0.18
HOXD4P09016 MAP3K11-208ENST00000530153 2830 ntTSL 2 BASIC13.95□□□□□ -0.18
HOXD4P09016 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC13.95□□□□□ -0.18
HOXD4P09016 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC13.95□□□□□ -0.18
HOXD4P09016 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC13.95□□□□□ -0.18
HOXD4P09016 OTUD7A-201ENST00000307050 10770 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
HOXD4P09016 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
HOXD4P09016 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC13.94□□□□□ -0.18
HOXD4P09016 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
HOXD4P09016 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
HOXD4P09016 CYB561-219ENST00000584031 3200 ntTSL 2 BASIC13.94□□□□□ -0.18
HOXD4P09016 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC13.94□□□□□ -0.18
HOXD4P09016 AC009090.5-201ENST00000624886 2285 ntBASIC13.94□□□□□ -0.18
HOXD4P09016 CEP78-203ENST00000376598 2404 ntAPPRIS ALT2 TSL 5 BASIC13.94□□□□□ -0.18
HOXD4P09016 CRB2-201ENST00000359999 3659 ntTSL 2 BASIC13.94□□□□□ -0.18
HOXD4P09016 ARHGAP23P1-201ENST00000562773 1937 ntBASIC13.94□□□□□ -0.18
HOXD4P09016 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
HOXD4P09016 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
HOXD4P09016 FLT3LG-201ENST00000204637 1046 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
HOXD4P09016 CDT1-201ENST00000301019 3240 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
HOXD4P09016 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
HOXD4P09016 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC13.94□□□□□ -0.18
HOXD4P09016 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC13.94□□□□□ -0.18
HOXD4P09016 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC13.94□□□□□ -0.18
HOXD4P09016 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC13.94□□□□□ -0.18
HOXD4P09016 AC012441.1-201ENST00000446669 685 ntBASIC13.94□□□□□ -0.18
HOXD4P09016 FO681548.1-201ENST00000455617 1132 ntBASIC13.94□□□□□ -0.18
HOXD4P09016 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC13.94□□□□□ -0.18
HOXD4P09016 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC13.94□□□□□ -0.18
HOXD4P09016 GSTZ1-219ENST00000557639 873 ntTSL 2 BASIC13.94□□□□□ -0.18
HOXD4P09016 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC13.94□□□□□ -0.18
HOXD4P09016 MIR4538-201ENST00000581377 78 ntBASIC13.94□□□□□ -0.18
HOXD4P09016 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
HOXD4P09016 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC13.94□□□□□ -0.18
HOXD4P09016 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC13.94□□□□□ -0.18
HOXD4P09016 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
HOXD4P09016 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC13.94□□□□□ -0.18
HOXD4P09016 RER1-203ENST00000378513 3000 ntTSL 3 BASIC13.94□□□□□ -0.18
HOXD4P09016 THTPA-201ENST00000288014 2860 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
HOXD4P09016 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC13.94□□□□□ -0.18
HOXD4P09016 ASIC4-202ENST00000358078 2741 ntAPPRIS ALT2 TSL 5 BASIC13.94□□□□□ -0.18
HOXD4P09016 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC13.94□□□□□ -0.18
HOXD4P09016 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
HOXD4P09016 SP100-205ENST00000409824 1802 ntTSL 5 BASIC13.94□□□□□ -0.18
HOXD4P09016 CACNA2D2-203ENST00000423994 5329 ntAPPRIS ALT2 TSL 5 BASIC13.94□□□□□ -0.18
HOXD4P09016 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
HOXD4P09016 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
HOXD4P09016 AL133338.1-201ENST00000565695 1517 ntBASIC13.94□□□□□ -0.18
HOXD4P09016 SPIDR-201ENST00000297423 3988 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
HOXD4P09016 GLG1-201ENST00000205061 8261 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
HOXD4P09016 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
HOXD4P09016 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
HOXD4P09016 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
HOXD4P09016 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
HOXD4P09016 MAP7-207ENST00000616617 4326 ntAPPRIS ALT2 TSL 5 BASIC13.94□□□□□ -0.18
HOXD4P09016 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC13.93□□□□□ -0.18
HOXD4P09016 AGER-206ENST00000375070 1463 ntTSL 5 BASIC13.93□□□□□ -0.18
HOXD4P09016 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
HOXD4P09016 AC041040.2-201ENST00000622926 2899 ntBASIC13.93□□□□□ -0.18
HOXD4P09016 TBCE-202ENST00000406207 2012 ntAPPRIS P3 TSL 5 BASIC13.93□□□□□ -0.18
HOXD4P09016 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC13.93□□□□□ -0.18
HOXD4P09016 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC13.93□□□□□ -0.18
HOXD4P09016 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
HOXD4P09016 ATXN7L1-207ENST00000477775 2426 ntTSL 2 BASIC13.93□□□□□ -0.18
HOXD4P09016 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC13.93□□□□□ -0.18
HOXD4P09016 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC13.93□□□□□ -0.18
HOXD4P09016 ARHGAP4-202ENST00000370016 3095 ntAPPRIS ALT2 TSL 5 BASIC13.93□□□□□ -0.18
HOXD4P09016 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
HOXD4P09016 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC13.93□□□□□ -0.18
HOXD4P09016 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC13.93□□□□□ -0.18
HOXD4P09016 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
HOXD4P09016 DRD5P1-201ENST00000456605 1438 ntBASIC13.93□□□□□ -0.18
HOXD4P09016 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
HOXD4P09016 LIN9-201ENST00000328205 3567 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
HOXD4P09016 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC13.93□□□□□ -0.18
HOXD4P09016 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
HOXD4P09016 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC13.93□□□□□ -0.18
HOXD4P09016 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC13.93□□□□□ -0.18
HOXD4P09016 Z82214.2-201ENST00000420269 531 ntTSL 4 BASIC13.93□□□□□ -0.18
HOXD4P09016 AC016694.1-201ENST00000434179 700 ntBASIC13.93□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms