Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 LIMS4-201ENST00000413601 1215 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
HLA-DOAP06340 AC053503.1-201ENST00000429882 519 ntTSL 3 BASIC17.92■□□□□ 0.46
HLA-DOAP06340 LINC01762-204ENST00000434879 436 ntTSL 2 BASIC17.92■□□□□ 0.46
HLA-DOAP06340 POM121L10P-201ENST00000436994 1285 ntBASIC17.92■□□□□ 0.46
HLA-DOAP06340 AC004898.1-201ENST00000451057 766 ntBASIC17.92■□□□□ 0.46
HLA-DOAP06340 ARTN-209ENST00000479128 471 ntTSL 3 BASIC17.92■□□□□ 0.46
HLA-DOAP06340 BTNL8-205ENST00000505126 1294 ntTSL 2 BASIC17.92■□□□□ 0.46
HLA-DOAP06340 AC104596.1-201ENST00000507826 579 ntTSL 4 BASIC17.92■□□□□ 0.46
HLA-DOAP06340 LINC00479-204ENST00000589300 718 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
HLA-DOAP06340 RPA3-201ENST00000223129 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
HLA-DOAP06340 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
HLA-DOAP06340 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
HLA-DOAP06340 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
HLA-DOAP06340 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC17.92■□□□□ 0.46
HLA-DOAP06340 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
HLA-DOAP06340 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
HLA-DOAP06340 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
HLA-DOAP06340 UGGT2-204ENST00000397618 1547 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
HLA-DOAP06340 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
HLA-DOAP06340 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
HLA-DOAP06340 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC17.91■□□□□ 0.46
HLA-DOAP06340 SLC26A10-201ENST00000320442 2389 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
HLA-DOAP06340 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
HLA-DOAP06340 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
HLA-DOAP06340 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
HLA-DOAP06340 VANGL2-201ENST00000368061 5340 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
HLA-DOAP06340 AL137783.1-201ENST00000623494 1896 ntBASIC17.91■□□□□ 0.46
HLA-DOAP06340 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
HLA-DOAP06340 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
HLA-DOAP06340 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC17.91■□□□□ 0.46
HLA-DOAP06340 CLRN1-203ENST00000328863 738 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
HLA-DOAP06340 AL022323.1-201ENST00000366110 957 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
HLA-DOAP06340 PLA2G5-201ENST00000375108 1161 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
HLA-DOAP06340 FAM27C-201ENST00000377542 616 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
HLA-DOAP06340 BUD31-202ENST00000403633 1139 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
HLA-DOAP06340 AL136309.1-201ENST00000403917 691 ntBASIC17.91■□□□□ 0.46
HLA-DOAP06340 AL157902.1-202ENST00000425010 763 ntTSL 3 BASIC17.91■□□□□ 0.46
HLA-DOAP06340 GDNF-AS1-201ENST00000503382 604 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
HLA-DOAP06340 NDUFC1-210ENST00000539387 725 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
HLA-DOAP06340 RNF41-210ENST00000552244 716 ntTSL 3 BASIC17.91■□□□□ 0.46
HLA-DOAP06340 RPL28-208ENST00000559463 852 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
HLA-DOAP06340 NAT9-222ENST00000583476 583 ntTSL 3 BASIC17.91■□□□□ 0.46
HLA-DOAP06340 AC021594.1-201ENST00000587174 636 ntTSL 3 BASIC17.91■□□□□ 0.46
HLA-DOAP06340 AC008537.4-201ENST00000595728 1103 ntTSL 5 BASIC17.91■□□□□ 0.46
HLA-DOAP06340 DIO1-215ENST00000610607 796 ntTSL 5 BASIC17.91■□□□□ 0.46
HLA-DOAP06340 AC244452.3-201ENST00000636814 210 ntBASIC17.91■□□□□ 0.46
HLA-DOAP06340 DAGLA-201ENST00000257215 5757 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
HLA-DOAP06340 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC17.91■□□□□ 0.46
HLA-DOAP06340 FZD4-201ENST00000531380 7383 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
HLA-DOAP06340 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
HLA-DOAP06340 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC17.91■□□□□ 0.46
HLA-DOAP06340 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC17.91■□□□□ 0.46
HLA-DOAP06340 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
HLA-DOAP06340 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC17.91■□□□□ 0.46
HLA-DOAP06340 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC17.91■□□□□ 0.46
HLA-DOAP06340 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC17.91■□□□□ 0.46
HLA-DOAP06340 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
HLA-DOAP06340 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
HLA-DOAP06340 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
HLA-DOAP06340 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC17.9■□□□□ 0.46
HLA-DOAP06340 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
HLA-DOAP06340 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC17.9■□□□□ 0.46
HLA-DOAP06340 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
HLA-DOAP06340 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC17.9■□□□□ 0.46
HLA-DOAP06340 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
HLA-DOAP06340 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
HLA-DOAP06340 HIST1H2AD-201ENST00000341023 393 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
HLA-DOAP06340 LAMTOR4-201ENST00000341942 605 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
HLA-DOAP06340 FGF13-204ENST00000436198 1165 ntTSL 2 BASIC17.9■□□□□ 0.46
HLA-DOAP06340 HIST2H2BB-201ENST00000449108 381 ntBASIC17.9■□□□□ 0.46
HLA-DOAP06340 ATP6V0CP2-201ENST00000469409 207 ntBASIC17.9■□□□□ 0.46
HLA-DOAP06340 FBXL8-208ENST00000521920 574 ntTSL 4 BASIC17.9■□□□□ 0.46
HLA-DOAP06340 SEPT9-233ENST00000590917 541 ntTSL 4 BASIC17.9■□□□□ 0.46
HLA-DOAP06340 IRF3-223ENST00000599223 1055 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
HLA-DOAP06340 AL121944.1-201ENST00000605945 686 ntTSL 2 BASIC17.9■□□□□ 0.46
HLA-DOAP06340 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
HLA-DOAP06340 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
HLA-DOAP06340 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
HLA-DOAP06340 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC17.9■□□□□ 0.46
HLA-DOAP06340 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
HLA-DOAP06340 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
HLA-DOAP06340 FKBP4P6-201ENST00000457486 1332 ntBASIC17.9■□□□□ 0.46
HLA-DOAP06340 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC17.9■□□□□ 0.46
HLA-DOAP06340 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC17.9■□□□□ 0.46
HLA-DOAP06340 RREB1-204ENST00000379938 8778 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
HLA-DOAP06340 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
HLA-DOAP06340 SLC41A1-201ENST00000367137 4997 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
HLA-DOAP06340 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
HLA-DOAP06340 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
HLA-DOAP06340 CAP2-206ENST00000489374 1430 ntTSL 2 BASIC17.89■□□□□ 0.46
HLA-DOAP06340 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
HLA-DOAP06340 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC17.89■□□□□ 0.46
HLA-DOAP06340 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC17.89■□□□□ 0.45
HLA-DOAP06340 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
HLA-DOAP06340 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC17.89■□□□□ 0.45
HLA-DOAP06340 PAFAH1B1-202ENST00000397195 5497 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
HLA-DOAP06340 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
HLA-DOAP06340 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
HLA-DOAP06340 SLC9A7P1-202ENST00000556476 2239 ntBASIC17.89■□□□□ 0.45
HLA-DOAP06340 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 89.2 ms