Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 RNPS1-216ENST00000565678 2298 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
SDCBPO00560 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC13.1□□□□□ -0.31
SDCBPO00560 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC13.1□□□□□ -0.31
SDCBPO00560 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC13.1□□□□□ -0.31
SDCBPO00560 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC13.1□□□□□ -0.31
SDCBPO00560 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC13.1□□□□□ -0.31
SDCBPO00560 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
SDCBPO00560 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
SDCBPO00560 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC13.1□□□□□ -0.31
SDCBPO00560 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC13.1□□□□□ -0.31
SDCBPO00560 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC13.1□□□□□ -0.31
SDCBPO00560 CYB561-201ENST00000360793 3001 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
SDCBPO00560 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
SDCBPO00560 SLC11A2-204ENST00000541174 2470 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
SDCBPO00560 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC13.09□□□□□ -0.31
SDCBPO00560 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC13.09□□□□□ -0.31
SDCBPO00560 OSBPL5-203ENST00000389989 3619 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
SDCBPO00560 MFSD11-211ENST00000588460 3612 ntAPPRIS P1 TSL 2 BASIC13.09□□□□□ -0.31
SDCBPO00560 ZSCAN32-215ENST00000618425 2788 ntTSL 2 BASIC13.09□□□□□ -0.31
SDCBPO00560 KNDC1-201ENST00000304613 6793 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
SDCBPO00560 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
SDCBPO00560 AC097359.2-201ENST00000604992 2389 ntBASIC13.09□□□□□ -0.31
SDCBPO00560 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
SDCBPO00560 NFATC1-218ENST00000592223 2531 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
SDCBPO00560 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
SDCBPO00560 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
SDCBPO00560 CIC-207ENST00000575354 5473 ntAPPRIS P2 TSL 1 (best) BASIC13.09□□□□□ -0.31
SDCBPO00560 PCDHGB8P-201ENST00000502926 1973 ntBASIC13.09□□□□□ -0.31
SDCBPO00560 PADI2-202ENST00000375486 4345 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
SDCBPO00560 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
SDCBPO00560 COQ7-209ENST00000569127 2575 ntTSL 2 BASIC13.09□□□□□ -0.31
SDCBPO00560 RPL15-201ENST00000307839 2730 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
SDCBPO00560 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC13.09□□□□□ -0.31
SDCBPO00560 DHX36-213ENST00000496811 6733 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
SDCBPO00560 TNRC18-203ENST00000399537 10572 ntAPPRIS ALT2 TSL 5 BASIC13.09□□□□□ -0.31
SDCBPO00560 TNRC18-205ENST00000430969 10562 ntAPPRIS P2 TSL 5 BASIC13.09□□□□□ -0.31
SDCBPO00560 ATRN-202ENST00000446916 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
SDCBPO00560 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
SDCBPO00560 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC13.09□□□□□ -0.31
SDCBPO00560 RBM39-205ENST00000397370 612 ntTSL 2 BASIC13.09□□□□□ -0.31
SDCBPO00560 AC254562.1-201ENST00000417586 456 ntBASIC13.09□□□□□ -0.31
SDCBPO00560 SPDYE7P-202ENST00000420373 878 ntBASIC13.09□□□□□ -0.31
SDCBPO00560 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC13.09□□□□□ -0.31
SDCBPO00560 SPDYE14P-201ENST00000442619 822 ntBASIC13.09□□□□□ -0.31
SDCBPO00560 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC13.09□□□□□ -0.31
SDCBPO00560 EEF1DP4-201ENST00000446006 880 ntBASIC13.09□□□□□ -0.31
SDCBPO00560 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC13.09□□□□□ -0.31
SDCBPO00560 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
SDCBPO00560 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC13.09□□□□□ -0.31
SDCBPO00560 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC13.09□□□□□ -0.31
SDCBPO00560 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC13.09□□□□□ -0.31
SDCBPO00560 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC13.09□□□□□ -0.31
SDCBPO00560 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC13.09□□□□□ -0.31
SDCBPO00560 LITAF-210ENST00000571976 548 ntTSL 2 BASIC13.09□□□□□ -0.31
SDCBPO00560 LITAF-214ENST00000574703 486 ntTSL 2 BASIC13.09□□□□□ -0.31
SDCBPO00560 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
SDCBPO00560 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC13.09□□□□□ -0.31
SDCBPO00560 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC13.09□□□□□ -0.31
SDCBPO00560 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC13.09□□□□□ -0.31
SDCBPO00560 AC007967.4-201ENST00000614700 386 ntBASIC13.09□□□□□ -0.31
SDCBPO00560 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC13.09□□□□□ -0.31
SDCBPO00560 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC13.09□□□□□ -0.31
SDCBPO00560 PRDM16-203ENST00000378391 5447 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
SDCBPO00560 SIGLEC5-201ENST00000534261 2360 ntAPPRIS P1 TSL 5 BASIC13.09□□□□□ -0.31
SDCBPO00560 MTHFR-210ENST00000641407 2387 ntBASIC13.09□□□□□ -0.31
SDCBPO00560 CENPO-202ENST00000380834 4386 ntAPPRIS P1 TSL 5 BASIC13.09□□□□□ -0.31
SDCBPO00560 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
SDCBPO00560 AMT-224ENST00000635808 1610 ntTSL 5 BASIC13.09□□□□□ -0.31
SDCBPO00560 MLXIPL-205ENST00000429400 3173 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
SDCBPO00560 USP10-201ENST00000219473 3009 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
SDCBPO00560 SAFB-201ENST00000292123 3042 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
SDCBPO00560 AC041040.2-201ENST00000622926 2899 ntBASIC13.09□□□□□ -0.31
SDCBPO00560 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC13.09□□□□□ -0.31
SDCBPO00560 CGN-201ENST00000271636 5091 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
SDCBPO00560 GCFC2-211ENST00000541687 4318 ntTSL 2 BASIC13.09□□□□□ -0.31
SDCBPO00560 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC13.09□□□□□ -0.31
SDCBPO00560 PREP-201ENST00000369110 2905 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
SDCBPO00560 RSBN1-204ENST00000612242 6592 ntAPPRIS P1 TSL 2 BASIC13.09□□□□□ -0.31
SDCBPO00560 GPANK1-205ENST00000375906 2793 ntAPPRIS P1 TSL 2 BASIC13.09□□□□□ -0.31
SDCBPO00560 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC13.09□□□□□ -0.31
SDCBPO00560 OR2V1-205ENST00000642036 2609 ntAPPRIS P1 BASIC13.09□□□□□ -0.31
SDCBPO00560 KCNH4-201ENST00000264661 3920 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.31
SDCBPO00560 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC13.08□□□□□ -0.31
SDCBPO00560 SSTR2-201ENST00000357585 7683 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.31
SDCBPO00560 SMAD2-202ENST00000356825 10445 ntTSL 1 (best) BASIC13.08□□□□□ -0.31
SDCBPO00560 SPPL3-201ENST00000353487 4148 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.31
SDCBPO00560 AL035456.1-201ENST00000456064 1369 ntBASIC13.08□□□□□ -0.31
SDCBPO00560 KHNYN-201ENST00000251343 6725 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.31
SDCBPO00560 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
SDCBPO00560 RAB43-202ENST00000393304 4230 ntAPPRIS P1 TSL 4 BASIC13.08□□□□□ -0.32
SDCBPO00560 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
SDCBPO00560 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC13.08□□□□□ -0.32
SDCBPO00560 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
SDCBPO00560 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
SDCBPO00560 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
SDCBPO00560 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
SDCBPO00560 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC13.08□□□□□ -0.32
SDCBPO00560 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC13.08□□□□□ -0.32
SDCBPO00560 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC13.08□□□□□ -0.32
SDCBPO00560 KRT18P13-201ENST00000400056 1290 ntBASIC13.08□□□□□ -0.32
Retrieved 100 of 98,524 protein–RNA pairs in 62.5 ms