Protein–RNA interactions for Protein: Q9NYD6

HOXC10, Homeobox protein Hox-C10, humanhuman

Predictions only

Length 342 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC10Q9NYD6 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
HOXC10Q9NYD6 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
HOXC10Q9NYD6 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC17.36■□□□□ 0.37
HOXC10Q9NYD6 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC17.36■□□□□ 0.37
HOXC10Q9NYD6 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
HOXC10Q9NYD6 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
HOXC10Q9NYD6 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HOXC10Q9NYD6 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HOXC10Q9NYD6 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
HOXC10Q9NYD6 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
HOXC10Q9NYD6 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
HOXC10Q9NYD6 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC17.35■□□□□ 0.37
HOXC10Q9NYD6 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HOXC10Q9NYD6 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC17.35■□□□□ 0.37
HOXC10Q9NYD6 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
HOXC10Q9NYD6 MRPS12-201ENST00000308018 1207 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HOXC10Q9NYD6 FZR1-201ENST00000313639 1215 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
HOXC10Q9NYD6 SLC25A26-201ENST00000336733 1023 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
HOXC10Q9NYD6 FGF14-202ENST00000376143 744 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HOXC10Q9NYD6 CD8B-204ENST00000393759 1096 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
HOXC10Q9NYD6 SNHG17-201ENST00000413755 648 ntTSL 3 BASIC17.35■□□□□ 0.37
HOXC10Q9NYD6 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC17.35■□□□□ 0.37
HOXC10Q9NYD6 FAM58BP-201ENST00000439056 645 ntBASIC17.35■□□□□ 0.37
HOXC10Q9NYD6 PENK-202ENST00000451791 1029 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HOXC10Q9NYD6 HNRNPA1P36-201ENST00000521313 955 ntBASIC17.35■□□□□ 0.37
HOXC10Q9NYD6 AF111169.4-201ENST00000556368 749 ntTSL 2 BASIC17.35■□□□□ 0.37
HOXC10Q9NYD6 AC013355.1-201ENST00000562625 723 ntBASIC17.35■□□□□ 0.37
HOXC10Q9NYD6 AC100827.2-201ENST00000563214 1194 ntBASIC17.35■□□□□ 0.37
HOXC10Q9NYD6 DUX4L46-201ENST00000566845 751 ntBASIC17.35■□□□□ 0.37
HOXC10Q9NYD6 AL445483.1-201ENST00000568695 736 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
HOXC10Q9NYD6 TBC1D16-203ENST00000570373 961 ntTSL 5 BASIC17.35■□□□□ 0.37
HOXC10Q9NYD6 CRHR1-208ENST00000577353 1206 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
HOXC10Q9NYD6 ZFR2-208ENST00000592398 532 ntTSL 5 BASIC17.35■□□□□ 0.37
HOXC10Q9NYD6 AC063977.3-201ENST00000597569 547 ntTSL 4 BASIC17.35■□□□□ 0.37
HOXC10Q9NYD6 C20orf141-202ENST00000603872 580 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HOXC10Q9NYD6 AC091544.8-201ENST00000619490 361 ntBASIC17.35■□□□□ 0.37
HOXC10Q9NYD6 AC091812.3-201ENST00000621362 345 ntBASIC17.35■□□□□ 0.37
HOXC10Q9NYD6 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
HOXC10Q9NYD6 STYXL1-201ENST00000248600 1415 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HOXC10Q9NYD6 ACTA1-202ENST00000366684 1491 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HOXC10Q9NYD6 CCDC121-202ENST00000394775 1472 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
HOXC10Q9NYD6 KRT8P19-201ENST00000551916 1455 ntBASIC17.35■□□□□ 0.37
HOXC10Q9NYD6 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HOXC10Q9NYD6 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
HOXC10Q9NYD6 WASH3P-204ENST00000558784 1644 ntTSL 5 BASIC17.35■□□□□ 0.37
HOXC10Q9NYD6 SHC1P1-201ENST00000425230 1745 ntBASIC17.35■□□□□ 0.37
HOXC10Q9NYD6 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC17.35■□□□□ 0.37
HOXC10Q9NYD6 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
HOXC10Q9NYD6 INE2-201ENST00000630399 1874 ntBASIC17.35■□□□□ 0.37
HOXC10Q9NYD6 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
HOXC10Q9NYD6 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HOXC10Q9NYD6 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
HOXC10Q9NYD6 EXOC7-213ENST00000467929 2260 ntTSL 2 BASIC17.35■□□□□ 0.37
HOXC10Q9NYD6 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
HOXC10Q9NYD6 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HOXC10Q9NYD6 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
HOXC10Q9NYD6 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
HOXC10Q9NYD6 AC084018.2-201ENST00000613093 2607 ntBASIC17.34■□□□□ 0.37
HOXC10Q9NYD6 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
HOXC10Q9NYD6 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC17.34■□□□□ 0.37
HOXC10Q9NYD6 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
HOXC10Q9NYD6 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
HOXC10Q9NYD6 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
HOXC10Q9NYD6 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
HOXC10Q9NYD6 CSNK2B-201ENST00000375865 908 ntAPPRIS P1 TSL 3 BASIC17.34■□□□□ 0.37
HOXC10Q9NYD6 PTPN20-206ENST00000395722 1995 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
HOXC10Q9NYD6 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
HOXC10Q9NYD6 IP6K2-205ENST00000413298 792 ntTSL 3 BASIC17.34■□□□□ 0.37
HOXC10Q9NYD6 AL121901.1-201ENST00000419613 366 ntTSL 3 BASIC17.34■□□□□ 0.37
HOXC10Q9NYD6 AGTRAP-206ENST00000452018 809 ntTSL 2 BASIC17.34■□□□□ 0.37
HOXC10Q9NYD6 TPD52L1-208ENST00000528193 789 ntTSL 5 BASIC17.34■□□□□ 0.37
HOXC10Q9NYD6 TMEM91-211ENST00000544232 725 ntTSL 3 BASIC17.34■□□□□ 0.37
HOXC10Q9NYD6 AC010547.4-201ENST00000561754 1378 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
HOXC10Q9NYD6 AC025259.3-202ENST00000564363 687 ntTSL 2 BASIC17.34■□□□□ 0.37
HOXC10Q9NYD6 SYT17-208ENST00000568433 812 ntTSL 3 BASIC17.34■□□□□ 0.37
HOXC10Q9NYD6 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC17.34■□□□□ 0.37
HOXC10Q9NYD6 AC009955.4-201ENST00000597192 544 ntBASIC17.34■□□□□ 0.37
HOXC10Q9NYD6 AC008825.2-201ENST00000603374 718 ntBASIC17.34■□□□□ 0.37
HOXC10Q9NYD6 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC17.34■□□□□ 0.37
HOXC10Q9NYD6 AL136295.7-201ENST00000619226 1200 ntBASIC17.34■□□□□ 0.37
HOXC10Q9NYD6 AL391005.1-201ENST00000623953 2435 ntBASIC17.34■□□□□ 0.37
HOXC10Q9NYD6 LINC01668-201ENST00000635001 513 ntTSL 4 BASIC17.34■□□□□ 0.37
HOXC10Q9NYD6 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
HOXC10Q9NYD6 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC17.34■□□□□ 0.37
HOXC10Q9NYD6 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
HOXC10Q9NYD6 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
HOXC10Q9NYD6 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
HOXC10Q9NYD6 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
HOXC10Q9NYD6 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
HOXC10Q9NYD6 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
HOXC10Q9NYD6 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
HOXC10Q9NYD6 FAM160B1-202ENST00000369248 5810 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
HOXC10Q9NYD6 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.37
HOXC10Q9NYD6 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC17.33■□□□□ 0.37
HOXC10Q9NYD6 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.37
HOXC10Q9NYD6 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC17.33■□□□□ 0.37
HOXC10Q9NYD6 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
HOXC10Q9NYD6 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.37
HOXC10Q9NYD6 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
HOXC10Q9NYD6 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 36.1 ms