Protein–RNA interactions for Protein: Q9NUP1

BLOC1S4, Biogenesis of lysosome-related organelles complex 1 subunit 4, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BLOC1S4Q9NUP1 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
BLOC1S4Q9NUP1 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC16.95■□□□□ 0.3
BLOC1S4Q9NUP1 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
BLOC1S4Q9NUP1 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC16.95■□□□□ 0.3
BLOC1S4Q9NUP1 HEY1-202ENST00000354724 2293 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
BLOC1S4Q9NUP1 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
BLOC1S4Q9NUP1 MAX-205ENST00000358664 1546 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
BLOC1S4Q9NUP1 TAF6-201ENST00000344095 2727 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
BLOC1S4Q9NUP1 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC16.95■□□□□ 0.3
BLOC1S4Q9NUP1 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC16.95■□□□□ 0.3
BLOC1S4Q9NUP1 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
BLOC1S4Q9NUP1 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
BLOC1S4Q9NUP1 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
BLOC1S4Q9NUP1 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
BLOC1S4Q9NUP1 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
BLOC1S4Q9NUP1 SLC25A4-201ENST00000281456 4440 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
BLOC1S4Q9NUP1 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC16.94■□□□□ 0.3
BLOC1S4Q9NUP1 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC16.94■□□□□ 0.3
BLOC1S4Q9NUP1 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
BLOC1S4Q9NUP1 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
BLOC1S4Q9NUP1 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
BLOC1S4Q9NUP1 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
BLOC1S4Q9NUP1 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC16.94■□□□□ 0.3
BLOC1S4Q9NUP1 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
BLOC1S4Q9NUP1 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC16.94■□□□□ 0.3
BLOC1S4Q9NUP1 LINC02395-201ENST00000546821 3157 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
BLOC1S4Q9NUP1 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
BLOC1S4Q9NUP1 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
BLOC1S4Q9NUP1 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
BLOC1S4Q9NUP1 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC16.94■□□□□ 0.3
BLOC1S4Q9NUP1 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC16.94■□□□□ 0.3
BLOC1S4Q9NUP1 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
BLOC1S4Q9NUP1 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC16.94■□□□□ 0.3
BLOC1S4Q9NUP1 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
BLOC1S4Q9NUP1 RPS15-201ENST00000233609 534 ntTSL 2 BASIC16.94■□□□□ 0.3
BLOC1S4Q9NUP1 NAT8-201ENST00000272425 947 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
BLOC1S4Q9NUP1 PGGT1BP2-201ENST00000398621 1028 ntBASIC16.94■□□□□ 0.3
BLOC1S4Q9NUP1 AP006294.1-201ENST00000415407 339 ntBASIC16.94■□□□□ 0.3
BLOC1S4Q9NUP1 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC16.94■□□□□ 0.3
BLOC1S4Q9NUP1 ACTG1P3-201ENST00000431775 1114 ntBASIC16.94■□□□□ 0.3
BLOC1S4Q9NUP1 RN7SL837P-201ENST00000463010 287 ntBASIC16.94■□□□□ 0.3
BLOC1S4Q9NUP1 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC16.94■□□□□ 0.3
BLOC1S4Q9NUP1 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC16.94■□□□□ 0.3
BLOC1S4Q9NUP1 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC16.94■□□□□ 0.3
BLOC1S4Q9NUP1 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC16.94■□□□□ 0.3
BLOC1S4Q9NUP1 AL596325.1-201ENST00000563991 1082 ntBASIC16.94■□□□□ 0.3
BLOC1S4Q9NUP1 MIR5189-201ENST00000577370 114 ntBASIC16.94■□□□□ 0.3
BLOC1S4Q9NUP1 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC16.94■□□□□ 0.3
BLOC1S4Q9NUP1 RPS15-205ENST00000586686 562 ntTSL 5 BASIC16.94■□□□□ 0.3
BLOC1S4Q9NUP1 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC16.94■□□□□ 0.3
BLOC1S4Q9NUP1 RPS15-208ENST00000591804 711 ntTSL 5 BASIC16.94■□□□□ 0.3
BLOC1S4Q9NUP1 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
BLOC1S4Q9NUP1 AC010319.3-201ENST00000597028 470 ntBASIC16.94■□□□□ 0.3
BLOC1S4Q9NUP1 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
BLOC1S4Q9NUP1 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC16.94■□□□□ 0.3
BLOC1S4Q9NUP1 MAGED2-201ENST00000218439 1958 ntAPPRIS P2 TSL 5 BASIC16.94■□□□□ 0.3
BLOC1S4Q9NUP1 AC011455.3-201ENST00000599996 1967 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
BLOC1S4Q9NUP1 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC16.94■□□□□ 0.3
BLOC1S4Q9NUP1 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC16.94■□□□□ 0.3
BLOC1S4Q9NUP1 FKRP-201ENST00000318584 3332 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
BLOC1S4Q9NUP1 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
BLOC1S4Q9NUP1 OR2V1-205ENST00000642036 2609 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
BLOC1S4Q9NUP1 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
BLOC1S4Q9NUP1 TGM6-201ENST00000202625 2292 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
BLOC1S4Q9NUP1 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC16.94■□□□□ 0.3
BLOC1S4Q9NUP1 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
BLOC1S4Q9NUP1 AURKC-203ENST00000448930 1318 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
BLOC1S4Q9NUP1 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC16.93■□□□□ 0.3
BLOC1S4Q9NUP1 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
BLOC1S4Q9NUP1 NID2-208ENST00000617139 3827 ntTSL 5 BASIC16.93■□□□□ 0.3
BLOC1S4Q9NUP1 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
BLOC1S4Q9NUP1 MTHFR-210ENST00000641407 2387 ntBASIC16.93■□□□□ 0.3
BLOC1S4Q9NUP1 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
BLOC1S4Q9NUP1 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
BLOC1S4Q9NUP1 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
BLOC1S4Q9NUP1 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC16.93■□□□□ 0.3
BLOC1S4Q9NUP1 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
BLOC1S4Q9NUP1 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
BLOC1S4Q9NUP1 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC16.93■□□□□ 0.3
BLOC1S4Q9NUP1 OR10H1-201ENST00000334920 1124 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
BLOC1S4Q9NUP1 AC098614.1-201ENST00000368528 745 ntBASIC16.93■□□□□ 0.3
BLOC1S4Q9NUP1 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
BLOC1S4Q9NUP1 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
BLOC1S4Q9NUP1 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
BLOC1S4Q9NUP1 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC16.93■□□□□ 0.3
BLOC1S4Q9NUP1 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC16.93■□□□□ 0.3
BLOC1S4Q9NUP1 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC16.93■□□□□ 0.3
BLOC1S4Q9NUP1 AC022616.1-201ENST00000518688 554 ntBASIC16.93■□□□□ 0.3
BLOC1S4Q9NUP1 POLE2-203ENST00000553805 496 ntTSL 2 BASIC16.93■□□□□ 0.3
BLOC1S4Q9NUP1 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC16.93■□□□□ 0.3
BLOC1S4Q9NUP1 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC16.93■□□□□ 0.3
BLOC1S4Q9NUP1 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
BLOC1S4Q9NUP1 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC16.93■□□□□ 0.3
BLOC1S4Q9NUP1 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
BLOC1S4Q9NUP1 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC16.93■□□□□ 0.3
BLOC1S4Q9NUP1 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
BLOC1S4Q9NUP1 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC16.93■□□□□ 0.3
BLOC1S4Q9NUP1 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC16.93■□□□□ 0.3
BLOC1S4Q9NUP1 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
BLOC1S4Q9NUP1 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC16.93■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms