Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 AHRR-211ENST00000515206 462 ntTSL 5 BASIC16.77■□□□□ 0.28
TRAIPQ9BWF2 AC023310.1-201ENST00000554836 735 ntBASIC16.77■□□□□ 0.28
TRAIPQ9BWF2 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC16.77■□□□□ 0.28
TRAIPQ9BWF2 FBXL12-211ENST00000591009 1005 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
TRAIPQ9BWF2 AL354740.1-203ENST00000593917 424 ntTSL 3 BASIC16.77■□□□□ 0.28
TRAIPQ9BWF2 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC16.77■□□□□ 0.28
TRAIPQ9BWF2 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
TRAIPQ9BWF2 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
TRAIPQ9BWF2 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
TRAIPQ9BWF2 PITPNM2-208ENST00000542749 6660 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.27
TRAIPQ9BWF2 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
TRAIPQ9BWF2 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC16.77■□□□□ 0.27
TRAIPQ9BWF2 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.27
TRAIPQ9BWF2 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC16.77■□□□□ 0.27
TRAIPQ9BWF2 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.27
TRAIPQ9BWF2 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.27
TRAIPQ9BWF2 ILF3-AS1-201ENST00000591501 1983 ntBASIC16.77■□□□□ 0.27
TRAIPQ9BWF2 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC16.77■□□□□ 0.27
TRAIPQ9BWF2 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TRAIPQ9BWF2 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TRAIPQ9BWF2 MAU2-201ENST00000262815 4994 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TRAIPQ9BWF2 SSR4P1-203ENST00000599569 2260 ntBASIC16.76■□□□□ 0.27
TRAIPQ9BWF2 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
TRAIPQ9BWF2 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
TRAIPQ9BWF2 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC16.76■□□□□ 0.27
TRAIPQ9BWF2 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC16.76■□□□□ 0.27
TRAIPQ9BWF2 DYNLL2-201ENST00000579991 6805 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TRAIPQ9BWF2 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
TRAIPQ9BWF2 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
TRAIPQ9BWF2 PRKX-201ENST00000262848 6031 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TRAIPQ9BWF2 CBY1-201ENST00000216029 1133 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TRAIPQ9BWF2 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
TRAIPQ9BWF2 CTHRC1-201ENST00000330295 1271 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TRAIPQ9BWF2 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TRAIPQ9BWF2 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TRAIPQ9BWF2 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
TRAIPQ9BWF2 KLF2P2-201ENST00000416807 1039 ntBASIC16.76■□□□□ 0.27
TRAIPQ9BWF2 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TRAIPQ9BWF2 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
TRAIPQ9BWF2 FAM25G-201ENST00000452267 345 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TRAIPQ9BWF2 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC16.76■□□□□ 0.27
TRAIPQ9BWF2 AC080188.2-201ENST00000508985 552 ntTSL 4 BASIC16.76■□□□□ 0.27
TRAIPQ9BWF2 MIR22HG-212ENST00000577164 931 ntTSL 4 BASIC16.76■□□□□ 0.27
TRAIPQ9BWF2 MIR4525-201ENST00000580000 75 ntBASIC16.76■□□□□ 0.27
TRAIPQ9BWF2 ING5-213ENST00000636051 4199 ntTSL 5 BASIC16.76■□□□□ 0.27
TRAIPQ9BWF2 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC16.76■□□□□ 0.27
TRAIPQ9BWF2 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
TRAIPQ9BWF2 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
TRAIPQ9BWF2 AC092850.2-201ENST00000623821 2697 ntBASIC16.76■□□□□ 0.27
TRAIPQ9BWF2 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC16.76■□□□□ 0.27
TRAIPQ9BWF2 SIGLEC12-203ENST00000598614 1434 ntTSL 5 BASIC16.76■□□□□ 0.27
TRAIPQ9BWF2 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
TRAIPQ9BWF2 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
TRAIPQ9BWF2 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC16.76■□□□□ 0.27
TRAIPQ9BWF2 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TRAIPQ9BWF2 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
TRAIPQ9BWF2 AC084364.1-201ENST00000551967 1556 ntBASIC16.76■□□□□ 0.27
TRAIPQ9BWF2 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
TRAIPQ9BWF2 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC16.75■□□□□ 0.27
TRAIPQ9BWF2 C15orf52-202ENST00000397536 4717 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
TRAIPQ9BWF2 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
TRAIPQ9BWF2 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
TRAIPQ9BWF2 AC099850.1-201ENST00000451775 1338 ntTSL 2 BASIC16.75■□□□□ 0.27
TRAIPQ9BWF2 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC16.75■□□□□ 0.27
TRAIPQ9BWF2 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
TRAIPQ9BWF2 LZTS1-202ENST00000381569 5706 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
TRAIPQ9BWF2 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC16.75■□□□□ 0.27
TRAIPQ9BWF2 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC16.75■□□□□ 0.27
TRAIPQ9BWF2 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
TRAIPQ9BWF2 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
TRAIPQ9BWF2 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC16.75■□□□□ 0.27
TRAIPQ9BWF2 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
TRAIPQ9BWF2 EMC4-201ENST00000249209 852 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
TRAIPQ9BWF2 BST2-201ENST00000252593 1019 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
TRAIPQ9BWF2 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
TRAIPQ9BWF2 CDKN1A-202ENST00000373711 793 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
TRAIPQ9BWF2 IGLV4-69-201ENST00000390282 419 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
TRAIPQ9BWF2 AC092614.1-201ENST00000419640 909 ntTSL 3 BASIC16.75■□□□□ 0.27
TRAIPQ9BWF2 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC16.75■□□□□ 0.27
TRAIPQ9BWF2 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC16.75■□□□□ 0.27
TRAIPQ9BWF2 PFN2-205ENST00000461868 613 ntTSL 2 BASIC16.75■□□□□ 0.27
TRAIPQ9BWF2 RNA5SP486-201ENST00000515961 83 ntBASIC16.75■□□□□ 0.27
TRAIPQ9BWF2 AC010491.1-202ENST00000567048 528 ntTSL 2 BASIC16.75■□□□□ 0.27
TRAIPQ9BWF2 AC120498.3-201ENST00000568884 542 ntTSL 4 BASIC16.75■□□□□ 0.27
TRAIPQ9BWF2 RN7SL48P-201ENST00000579283 293 ntBASIC16.75■□□□□ 0.27
TRAIPQ9BWF2 MIR4538-201ENST00000581377 78 ntBASIC16.75■□□□□ 0.27
TRAIPQ9BWF2 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
TRAIPQ9BWF2 SLC35A1-202ENST00000369556 1720 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
TRAIPQ9BWF2 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
TRAIPQ9BWF2 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
TRAIPQ9BWF2 AC020658.6-201ENST00000623564 1870 ntBASIC16.75■□□□□ 0.27
TRAIPQ9BWF2 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
TRAIPQ9BWF2 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
TRAIPQ9BWF2 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
TRAIPQ9BWF2 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
TRAIPQ9BWF2 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
TRAIPQ9BWF2 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
TRAIPQ9BWF2 NORAD-201ENST00000565493 5339 ntBASIC16.75■□□□□ 0.27
TRAIPQ9BWF2 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC16.75■□□□□ 0.27
TRAIPQ9BWF2 OR4D1-202ENST00000641449 4925 ntAPPRIS P1 BASIC16.74■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms