Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC13.05□□□□□ -0.32
COL12A1Q99715 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC13.05□□□□□ -0.32
COL12A1Q99715 MFF-204ENST00000353339 2186 ntTSL 5 BASIC13.05□□□□□ -0.32
COL12A1Q99715 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC13.05□□□□□ -0.32
COL12A1Q99715 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC13.05□□□□□ -0.32
COL12A1Q99715 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC13.05□□□□□ -0.32
COL12A1Q99715 ADSL-201ENST00000216194 1620 ntTSL 2 BASIC13.05□□□□□ -0.32
COL12A1Q99715 NACA-202ENST00000393891 1059 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
COL12A1Q99715 CST1-202ENST00000398402 655 ntAPPRIS P1 TSL 5 BASIC13.05□□□□□ -0.32
COL12A1Q99715 CDK2-203ENST00000440311 1031 ntTSL 2 BASIC13.05□□□□□ -0.32
COL12A1Q99715 MESTP3-201ENST00000503460 968 ntBASIC13.05□□□□□ -0.32
COL12A1Q99715 AC113347.2-201ENST00000512350 279 ntBASIC13.05□□□□□ -0.32
COL12A1Q99715 POLD4-206ENST00000530584 899 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
COL12A1Q99715 SRP14-204ENST00000558720 780 ntTSL 2 BASIC13.05□□□□□ -0.32
COL12A1Q99715 AC068867.1-201ENST00000559855 150 ntBASIC13.05□□□□□ -0.32
COL12A1Q99715 TMEM98-205ENST00000578289 806 ntTSL 3 BASIC13.05□□□□□ -0.32
COL12A1Q99715 AP005264.6-204ENST00000588436 719 ntBASIC13.05□□□□□ -0.32
COL12A1Q99715 IDH3A-224ENST00000629769 114 ntTSL 5 BASIC13.05□□□□□ -0.32
COL12A1Q99715 ANKDD1A-202ENST00000395720 1518 ntTSL 5 BASIC13.05□□□□□ -0.32
COL12A1Q99715 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC13.05□□□□□ -0.32
COL12A1Q99715 APBB3-202ENST00000356738 1804 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
COL12A1Q99715 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
COL12A1Q99715 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC13.05□□□□□ -0.32
COL12A1Q99715 SERPINB6-206ENST00000380546 1375 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
COL12A1Q99715 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
COL12A1Q99715 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
COL12A1Q99715 ASGR1-201ENST00000269299 1504 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
COL12A1Q99715 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC13.04□□□□□ -0.32
COL12A1Q99715 BGLAP-201ENST00000368272 732 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
COL12A1Q99715 AL583839.1-201ENST00000445280 691 ntTSL 3 BASIC13.04□□□□□ -0.32
COL12A1Q99715 AC093879.1-201ENST00000508959 1176 ntTSL 2 BASIC13.04□□□□□ -0.32
COL12A1Q99715 AC113391.2-201ENST00000512245 553 ntTSL 4 BASIC13.04□□□□□ -0.32
COL12A1Q99715 AC009884.2-201ENST00000603110 324 ntBASIC13.04□□□□□ -0.32
COL12A1Q99715 AP001043.1-206ENST00000613045 730 ntTSL 5 BASIC13.04□□□□□ -0.32
COL12A1Q99715 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
COL12A1Q99715 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC13.04□□□□□ -0.32
COL12A1Q99715 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC13.04□□□□□ -0.32
COL12A1Q99715 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
COL12A1Q99715 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
COL12A1Q99715 LINC00513-201ENST00000447430 1616 ntTSL 5 BASIC13.04□□□□□ -0.32
COL12A1Q99715 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
COL12A1Q99715 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC13.04□□□□□ -0.32
COL12A1Q99715 WASH7P-201ENST00000488147 1351 ntBASIC13.04□□□□□ -0.32
COL12A1Q99715 IZUMO1R-201ENST00000328458 798 ntAPPRIS P2 TSL 5 BASIC13.04□□□□□ -0.32
COL12A1Q99715 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC13.04□□□□□ -0.32
COL12A1Q99715 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC13.04□□□□□ -0.32
COL12A1Q99715 AL391832.2-203ENST00000423175 554 ntTSL 3 BASIC13.04□□□□□ -0.32
COL12A1Q99715 AL592076.1-201ENST00000424448 303 ntBASIC13.04□□□□□ -0.32
COL12A1Q99715 AC093627.2-201ENST00000497017 568 ntTSL 4 BASIC13.04□□□□□ -0.32
COL12A1Q99715 AC093826.1-201ENST00000508655 993 ntBASIC13.04□□□□□ -0.32
COL12A1Q99715 LINC01598-205ENST00000508763 719 ntTSL 5 BASIC13.04□□□□□ -0.32
COL12A1Q99715 LINC02380-201ENST00000510956 1038 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
COL12A1Q99715 ADM-203ENST00000525063 867 ntAPPRIS P1 TSL 3 BASIC13.04□□□□□ -0.32
COL12A1Q99715 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC13.04□□□□□ -0.32
COL12A1Q99715 AL590235.1-201ENST00000564650 861 ntBASIC13.04□□□□□ -0.32
COL12A1Q99715 AC124068.2-201ENST00000569473 1109 ntBASIC13.04□□□□□ -0.32
COL12A1Q99715 LINC01746-201ENST00000621390 449 ntTSL 3 BASIC13.04□□□□□ -0.32
COL12A1Q99715 PRKAB1-210ENST00000630317 258 ntTSL 2 BASIC13.04□□□□□ -0.32
COL12A1Q99715 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
COL12A1Q99715 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
COL12A1Q99715 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC13.04□□□□□ -0.32
COL12A1Q99715 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
COL12A1Q99715 AL513315.1-201ENST00000640756 1370 ntTSL 5 BASIC13.04□□□□□ -0.32
COL12A1Q99715 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
COL12A1Q99715 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC13.04□□□□□ -0.32
COL12A1Q99715 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
COL12A1Q99715 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
COL12A1Q99715 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC13.04□□□□□ -0.32
COL12A1Q99715 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC13.04□□□□□ -0.32
COL12A1Q99715 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC13.04□□□□□ -0.32
COL12A1Q99715 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC13.04□□□□□ -0.32
COL12A1Q99715 C11orf49-203ENST00000378618 1166 ntTSL 5 BASIC13.04□□□□□ -0.32
COL12A1Q99715 NME4-203ENST00000397722 1232 ntTSL 2 BASIC13.04□□□□□ -0.32
COL12A1Q99715 CFAP36-203ENST00000403007 759 ntTSL 2 BASIC13.04□□□□□ -0.32
COL12A1Q99715 AC012507.1-201ENST00000454890 600 ntTSL 4 BASIC13.04□□□□□ -0.32
COL12A1Q99715 IGHV3OR15-7-201ENST00000558565 359 ntAPPRIS P1 BASIC13.04□□□□□ -0.32
COL12A1Q99715 LINC00923-205ENST00000615399 932 ntTSL 5 BASIC13.04□□□□□ -0.32
COL12A1Q99715 AC129778.1-201ENST00000623957 920 ntTSL 5 BASIC13.04□□□□□ -0.32
COL12A1Q99715 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC13.04□□□□□ -0.32
COL12A1Q99715 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
COL12A1Q99715 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
COL12A1Q99715 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC13.04□□□□□ -0.32
COL12A1Q99715 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
COL12A1Q99715 SERPINA1-209ENST00000449399 1559 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
COL12A1Q99715 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC13.03□□□□□ -0.32
COL12A1Q99715 NHP2P1-201ENST00000335274 462 ntBASIC13.03□□□□□ -0.32
COL12A1Q99715 LINC00339-202ENST00000416769 1077 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
COL12A1Q99715 FAM197Y6-201ENST00000420524 766 ntBASIC13.03□□□□□ -0.32
COL12A1Q99715 RHBDD2-203ENST00000428119 1274 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
COL12A1Q99715 RPL9-203ENST00000449470 1127 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
COL12A1Q99715 TAGLN3-203ENST00000455401 1164 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
COL12A1Q99715 GLUD1P3-201ENST00000507952 896 ntTSL 2 BASIC13.03□□□□□ -0.32
COL12A1Q99715 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC13.03□□□□□ -0.32
COL12A1Q99715 GOLGA2P7-209ENST00000560408 745 ntBASIC13.03□□□□□ -0.32
COL12A1Q99715 AC015912.3-201ENST00000619432 348 ntBASIC13.03□□□□□ -0.32
COL12A1Q99715 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
COL12A1Q99715 THOC6-207ENST00000574549 1300 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
COL12A1Q99715 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC13.03□□□□□ -0.32
COL12A1Q99715 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC13.03□□□□□ -0.32
COL12A1Q99715 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Retrieved 100 of 98,524 protein–RNA pairs in 53.3 ms