Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 CICP11-201ENST00000434745 2827 ntBASIC14.84□□□□□ -0.03
LMX1AQ8TE12 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
LMX1AQ8TE12 MRPS7-201ENST00000245539 1406 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
LMX1AQ8TE12 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
LMX1AQ8TE12 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
LMX1AQ8TE12 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC14.84□□□□□ -0.03
LMX1AQ8TE12 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
LMX1AQ8TE12 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
LMX1AQ8TE12 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
LMX1AQ8TE12 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
LMX1AQ8TE12 FGF1-201ENST00000337706 1469 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
LMX1AQ8TE12 FGFR1OP-201ENST00000349556 1484 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
LMX1AQ8TE12 MYLK3-201ENST00000394809 6911 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
LMX1AQ8TE12 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
LMX1AQ8TE12 ANGPTL8-201ENST00000252453 872 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
LMX1AQ8TE12 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
LMX1AQ8TE12 TEX13B-201ENST00000302917 1248 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
LMX1AQ8TE12 HNRNPA1P32-201ENST00000396326 963 ntBASIC14.84□□□□□ -0.03
LMX1AQ8TE12 MIR663B-201ENST00000408361 115 ntBASIC14.84□□□□□ -0.03
LMX1AQ8TE12 LIMS4-201ENST00000413601 1215 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
LMX1AQ8TE12 HLA-K-203ENST00000430151 1046 ntBASIC14.84□□□□□ -0.03
LMX1AQ8TE12 AC006003.1-201ENST00000448541 613 ntTSL 4 BASIC14.84□□□□□ -0.03
LMX1AQ8TE12 AL450003.2-201ENST00000450445 428 ntTSL 5 BASIC14.84□□□□□ -0.03
LMX1AQ8TE12 APOA2-204ENST00000464492 530 ntTSL 3 BASIC14.84□□□□□ -0.03
LMX1AQ8TE12 KCNK16-205ENST00000507712 889 ntTSL 3 BASIC14.84□□□□□ -0.03
LMX1AQ8TE12 RPL27A-202ENST00000524496 558 ntTSL 3 BASIC14.84□□□□□ -0.03
LMX1AQ8TE12 RNF41-210ENST00000552244 716 ntTSL 3 BASIC14.84□□□□□ -0.03
LMX1AQ8TE12 SEPT9-233ENST00000590917 541 ntTSL 4 BASIC14.84□□□□□ -0.03
LMX1AQ8TE12 AC073413.1-201ENST00000603927 732 ntBASIC14.84□□□□□ -0.03
LMX1AQ8TE12 AC084346.2-201ENST00000607097 949 ntBASIC14.84□□□□□ -0.03
LMX1AQ8TE12 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC14.84□□□□□ -0.03
LMX1AQ8TE12 ANGPTL8-204ENST00000616433 1223 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
LMX1AQ8TE12 EDDM13-208ENST00000637802 854 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
LMX1AQ8TE12 AC063926.3-201ENST00000624734 5658 ntBASIC14.84□□□□□ -0.03
LMX1AQ8TE12 AC105250.1-201ENST00000509378 2057 ntBASIC14.84□□□□□ -0.03
LMX1AQ8TE12 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC14.84□□□□□ -0.03
LMX1AQ8TE12 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC14.84□□□□□ -0.03
LMX1AQ8TE12 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC14.84□□□□□ -0.03
LMX1AQ8TE12 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC14.84□□□□□ -0.03
LMX1AQ8TE12 ZNF711-201ENST00000276123 2887 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
LMX1AQ8TE12 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC14.84□□□□□ -0.03
LMX1AQ8TE12 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
LMX1AQ8TE12 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
LMX1AQ8TE12 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC14.84□□□□□ -0.03
LMX1AQ8TE12 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC14.84□□□□□ -0.03
LMX1AQ8TE12 AC092850.2-201ENST00000623821 2697 ntBASIC14.84□□□□□ -0.03
LMX1AQ8TE12 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
LMX1AQ8TE12 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC14.84□□□□□ -0.03
LMX1AQ8TE12 NFATC4-204ENST00000424781 5488 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
LMX1AQ8TE12 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC14.84□□□□□ -0.03
LMX1AQ8TE12 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC14.84□□□□□ -0.03
LMX1AQ8TE12 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC14.84□□□□□ -0.03
LMX1AQ8TE12 AHCYL2-202ENST00000446544 5026 ntAPPRIS ALT1 TSL 1 (best) BASIC14.84□□□□□ -0.03
LMX1AQ8TE12 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
LMX1AQ8TE12 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
LMX1AQ8TE12 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC14.83□□□□□ -0.03
LMX1AQ8TE12 SELPLG-201ENST00000228463 1704 ntAPPRIS ALT2 TSL 2 BASIC14.83□□□□□ -0.03
LMX1AQ8TE12 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
LMX1AQ8TE12 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
LMX1AQ8TE12 KMT2E-201ENST00000257745 6714 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
LMX1AQ8TE12 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
LMX1AQ8TE12 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC14.83□□□□□ -0.03
LMX1AQ8TE12 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
LMX1AQ8TE12 ARRB2-204ENST00000412477 1779 ntTSL 2 BASIC14.83□□□□□ -0.03
LMX1AQ8TE12 CACNA2D2-203ENST00000423994 5329 ntAPPRIS ALT2 TSL 5 BASIC14.83□□□□□ -0.03
LMX1AQ8TE12 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.03
LMX1AQ8TE12 SNAP91-213ENST00000521485 4521 ntAPPRIS ALT2 TSL 5 BASIC14.83□□□□□ -0.04
LMX1AQ8TE12 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
LMX1AQ8TE12 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC14.83□□□□□ -0.04
LMX1AQ8TE12 MYO3A-201ENST00000265944 5581 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
LMX1AQ8TE12 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC14.83□□□□□ -0.04
LMX1AQ8TE12 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
LMX1AQ8TE12 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
LMX1AQ8TE12 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC14.83□□□□□ -0.04
LMX1AQ8TE12 KIF21A-202ENST00000361961 6601 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
LMX1AQ8TE12 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
LMX1AQ8TE12 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
LMX1AQ8TE12 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
LMX1AQ8TE12 C8orf74-201ENST00000304519 1036 ntAPPRIS P2 TSL 1 (best) BASIC14.83□□□□□ -0.04
LMX1AQ8TE12 IP6K2-202ENST00000340879 1185 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
LMX1AQ8TE12 CTNNBIP1-202ENST00000377258 852 ntAPPRIS P1 TSL 3 BASIC14.83□□□□□ -0.04
LMX1AQ8TE12 MCFD2-204ENST00000409207 1113 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.04
LMX1AQ8TE12 CALR4P-201ENST00000431943 946 ntBASIC14.83□□□□□ -0.04
LMX1AQ8TE12 AL162742.1-201ENST00000434792 954 ntTSL 2 BASIC14.83□□□□□ -0.04
LMX1AQ8TE12 LINC01762-204ENST00000434879 436 ntTSL 2 BASIC14.83□□□□□ -0.04
LMX1AQ8TE12 HSPB1P2-201ENST00000448722 546 ntBASIC14.83□□□□□ -0.04
LMX1AQ8TE12 GTF2H2-204ENST00000517900 659 ntTSL 5 BASIC14.83□□□□□ -0.04
LMX1AQ8TE12 RPL28-208ENST00000559463 852 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
LMX1AQ8TE12 TBC1D16-205ENST00000572862 1141 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
LMX1AQ8TE12 AC020914.3-201ENST00000594712 304 ntBASIC14.83□□□□□ -0.04
LMX1AQ8TE12 ZACNP1-201ENST00000612259 710 ntBASIC14.83□□□□□ -0.04
LMX1AQ8TE12 AC044839.1-204ENST00000634777 1058 ntTSL 5 BASIC14.83□□□□□ -0.04
LMX1AQ8TE12 DKFZP434H168-201ENST00000567381 1905 ntBASIC14.83□□□□□ -0.04
LMX1AQ8TE12 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC14.83□□□□□ -0.04
LMX1AQ8TE12 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC14.83□□□□□ -0.04
LMX1AQ8TE12 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC14.83□□□□□ -0.04
LMX1AQ8TE12 GTF2IRD1-205ENST00000476977 5868 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
LMX1AQ8TE12 RHD-204ENST00000417538 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
LMX1AQ8TE12 AL109910.1-201ENST00000452071 1330 ntTSL 2 BASIC14.83□□□□□ -0.04
LMX1AQ8TE12 PCDHA1-201ENST00000378133 2726 ntBASIC14.83□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 98.5 ms