Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC15.72■□□□□ 0.11
CHD9Q3L8U1 OR2K2-201ENST00000302681 1078 ntAPPRIS P1 BASIC15.72■□□□□ 0.11
CHD9Q3L8U1 KRTAP2-4-201ENST00000394015 764 ntAPPRIS P1 BASIC15.72■□□□□ 0.11
CHD9Q3L8U1 RBM14-204ENST00000409738 372 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
CHD9Q3L8U1 AC254562.2-201ENST00000428786 667 ntTSL 3 BASIC15.72■□□□□ 0.11
CHD9Q3L8U1 DPY19L2P5-201ENST00000456300 331 ntBASIC15.72■□□□□ 0.11
CHD9Q3L8U1 OCEL1-206ENST00000597836 1044 ntAPPRIS ALT2 TSL 2 BASIC15.72■□□□□ 0.11
CHD9Q3L8U1 ZNF530-203ENST00000597864 634 ntTSL 2 BASIC15.72■□□□□ 0.11
CHD9Q3L8U1 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CHD9Q3L8U1 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
CHD9Q3L8U1 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC15.71■□□□□ 0.11
CHD9Q3L8U1 SNRPN-203ENST00000400097 1605 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
CHD9Q3L8U1 UCN2-201ENST00000273610 1481 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
CHD9Q3L8U1 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
CHD9Q3L8U1 THAP4-202ENST00000402136 785 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
CHD9Q3L8U1 AC106047.2-201ENST00000511723 743 ntBASIC15.71■□□□□ 0.11
CHD9Q3L8U1 MIR3180-2-201ENST00000581748 88 ntBASIC15.71■□□□□ 0.11
CHD9Q3L8U1 SIGLEC22P-202ENST00000602065 544 ntTSL 4 BASIC15.71■□□□□ 0.11
CHD9Q3L8U1 ARL16-215ENST00000622299 1053 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
CHD9Q3L8U1 AL138720.1-201ENST00000629853 778 ntTSL 5 BASIC15.71■□□□□ 0.11
CHD9Q3L8U1 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.11
CHD9Q3L8U1 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC15.71■□□□□ 0.11
CHD9Q3L8U1 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC15.71■□□□□ 0.11
CHD9Q3L8U1 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.11
CHD9Q3L8U1 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC15.71■□□□□ 0.11
CHD9Q3L8U1 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
CHD9Q3L8U1 ACTL7A-201ENST00000333999 1494 ntAPPRIS P1 BASIC15.71■□□□□ 0.11
CHD9Q3L8U1 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC15.71■□□□□ 0.11
CHD9Q3L8U1 SLC13A3-205ENST00000417157 876 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
CHD9Q3L8U1 AC156455.1-203ENST00000423999 893 ntTSL 2 BASIC15.71■□□□□ 0.11
CHD9Q3L8U1 ZSCAN2-208ENST00000485222 910 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
CHD9Q3L8U1 ZSCAN2-210ENST00000538076 1109 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
CHD9Q3L8U1 AL022334.2-201ENST00000610000 484 ntBASIC15.71■□□□□ 0.11
CHD9Q3L8U1 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC15.71■□□□□ 0.1
CHD9Q3L8U1 AC003102.2-201ENST00000589195 1469 ntBASIC15.71■□□□□ 0.1
CHD9Q3L8U1 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
CHD9Q3L8U1 ZNF619-201ENST00000314686 2233 ntTSL 2 BASIC15.71■□□□□ 0.1
CHD9Q3L8U1 FAM90A21P-201ENST00000510875 1396 ntBASIC15.7■□□□□ 0.1
CHD9Q3L8U1 FAM90A15P-201ENST00000514465 1395 ntBASIC15.7■□□□□ 0.1
CHD9Q3L8U1 FAM90A6P-201ENST00000515148 1394 ntBASIC15.7■□□□□ 0.1
CHD9Q3L8U1 FAM90A16P-201ENST00000526662 1395 ntBASIC15.7■□□□□ 0.1
CHD9Q3L8U1 FAM90A9P-201ENST00000527940 1395 ntBASIC15.7■□□□□ 0.1
CHD9Q3L8U1 FAM90A5P-201ENST00000528738 1395 ntBASIC15.7■□□□□ 0.1
CHD9Q3L8U1 FAM90A14P-201ENST00000530386 1395 ntBASIC15.7■□□□□ 0.1
CHD9Q3L8U1 FAM90A13P-201ENST00000534703 1395 ntBASIC15.7■□□□□ 0.1
CHD9Q3L8U1 AP000845.1-201ENST00000581677 2131 ntBASIC15.7■□□□□ 0.1
CHD9Q3L8U1 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
CHD9Q3L8U1 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC15.7■□□□□ 0.1
CHD9Q3L8U1 AC004522.1-201ENST00000419978 654 ntBASIC15.7■□□□□ 0.1
CHD9Q3L8U1 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC15.7■□□□□ 0.1
CHD9Q3L8U1 AC008050.1-201ENST00000554926 632 ntTSL 3 BASIC15.7■□□□□ 0.1
CHD9Q3L8U1 AC099811.3-201ENST00000586351 425 ntTSL 3 BASIC15.7■□□□□ 0.1
CHD9Q3L8U1 AC114296.1-204ENST00000637197 1173 ntAPPRIS P5 TSL 5 BASIC15.7■□□□□ 0.1
CHD9Q3L8U1 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC15.7■□□□□ 0.1
CHD9Q3L8U1 CNTNAP2-225ENST00000639247 2064 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
CHD9Q3L8U1 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CHD9Q3L8U1 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
CHD9Q3L8U1 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC15.7■□□□□ 0.1
CHD9Q3L8U1 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC15.7■□□□□ 0.1
CHD9Q3L8U1 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CHD9Q3L8U1 GTF3C6-201ENST00000329970 952 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CHD9Q3L8U1 AC084030.1-201ENST00000455068 561 ntTSL 4 BASIC15.7■□□□□ 0.1
CHD9Q3L8U1 RPS5-204ENST00000598098 536 ntTSL 2 BASIC15.7■□□□□ 0.1
CHD9Q3L8U1 AC007326.1-201ENST00000604539 458 ntBASIC15.7■□□□□ 0.1
CHD9Q3L8U1 PSMD5-208ENST00000625444 219 ntTSL 5 BASIC15.7■□□□□ 0.1
CHD9Q3L8U1 SLC12A5-219ENST00000628272 401 ntTSL 3 BASIC15.7■□□□□ 0.1
CHD9Q3L8U1 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
CHD9Q3L8U1 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
CHD9Q3L8U1 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
CHD9Q3L8U1 ERCC1-208ENST00000589165 1453 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
CHD9Q3L8U1 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
CHD9Q3L8U1 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
CHD9Q3L8U1 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CHD9Q3L8U1 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CHD9Q3L8U1 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
CHD9Q3L8U1 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC15.7■□□□□ 0.1
CHD9Q3L8U1 HORMAD1-201ENST00000322343 1771 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
CHD9Q3L8U1 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
CHD9Q3L8U1 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
CHD9Q3L8U1 PGAP2-212ENST00000464906 1259 ntTSL 2 BASIC15.69■□□□□ 0.1
CHD9Q3L8U1 GDNF-207ENST00000515058 764 ntTSL 5 BASIC15.69■□□□□ 0.1
CHD9Q3L8U1 AC005845.1-201ENST00000539206 653 ntTSL 3 BASIC15.69■□□□□ 0.1
CHD9Q3L8U1 BX088702.1-201ENST00000610784 235 ntBASIC15.69■□□□□ 0.1
CHD9Q3L8U1 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC15.69■□□□□ 0.1
CHD9Q3L8U1 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CHD9Q3L8U1 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
CHD9Q3L8U1 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC15.69■□□□□ 0.1
CHD9Q3L8U1 RUBCNL-212ENST00000631139 1948 ntAPPRIS ALT2 TSL 2 BASIC15.69■□□□□ 0.1
CHD9Q3L8U1 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
CHD9Q3L8U1 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC15.69■□□□□ 0.1
CHD9Q3L8U1 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
CHD9Q3L8U1 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
CHD9Q3L8U1 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
CHD9Q3L8U1 RASGEF1B-202ENST00000335927 1756 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
CHD9Q3L8U1 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CHD9Q3L8U1 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CHD9Q3L8U1 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC15.69■□□□□ 0.1
CHD9Q3L8U1 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
CHD9Q3L8U1 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CHD9Q3L8U1 TNNI2-201ENST00000252898 678 ntAPPRIS P3 TSL 3 BASIC15.69■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 76.9 ms