Protein–RNA interactions for Protein: Q2M3G4

SHROOM1, Protein Shroom1, humanhuman

Predicted RBP Predictions only

Length 852 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1Q2M3G4 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
SHROOM1Q2M3G4 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC17.69■□□□□ 0.42
SHROOM1Q2M3G4 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC17.69■□□□□ 0.42
SHROOM1Q2M3G4 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
SHROOM1Q2M3G4 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
SHROOM1Q2M3G4 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC17.69■□□□□ 0.42
SHROOM1Q2M3G4 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
SHROOM1Q2M3G4 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SHROOM1Q2M3G4 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SHROOM1Q2M3G4 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC17.69■□□□□ 0.42
SHROOM1Q2M3G4 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
SHROOM1Q2M3G4 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
SHROOM1Q2M3G4 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SHROOM1Q2M3G4 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC17.69■□□□□ 0.42
SHROOM1Q2M3G4 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
SHROOM1Q2M3G4 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SHROOM1Q2M3G4 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC17.68■□□□□ 0.42
SHROOM1Q2M3G4 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
SHROOM1Q2M3G4 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
SHROOM1Q2M3G4 PTPN20-206ENST00000395722 1995 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
SHROOM1Q2M3G4 AC023024.2-201ENST00000623561 1993 ntBASIC17.68■□□□□ 0.42
SHROOM1Q2M3G4 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
SHROOM1Q2M3G4 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SHROOM1Q2M3G4 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
SHROOM1Q2M3G4 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC17.68■□□□□ 0.42
SHROOM1Q2M3G4 FZR1-201ENST00000313639 1215 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
SHROOM1Q2M3G4 MBD3L5-201ENST00000329753 778 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SHROOM1Q2M3G4 CSH2-201ENST00000336844 1173 ntTSL 2 BASIC17.68■□□□□ 0.42
SHROOM1Q2M3G4 CSH2-202ENST00000345366 598 ntTSL 5 BASIC17.68■□□□□ 0.42
SHROOM1Q2M3G4 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
SHROOM1Q2M3G4 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC17.68■□□□□ 0.42
SHROOM1Q2M3G4 CD8B-204ENST00000393759 1096 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
SHROOM1Q2M3G4 BUD31-202ENST00000403633 1139 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SHROOM1Q2M3G4 MEMO1-204ENST00000407893 682 ntTSL 5 BASIC17.68■□□□□ 0.42
SHROOM1Q2M3G4 AC080129.2-201ENST00000418353 430 ntTSL 3 BASIC17.68■□□□□ 0.42
SHROOM1Q2M3G4 RPL35A-205ENST00000448864 549 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SHROOM1Q2M3G4 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
SHROOM1Q2M3G4 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC17.68■□□□□ 0.42
SHROOM1Q2M3G4 AC005833.2-201ENST00000527518 1249 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
SHROOM1Q2M3G4 AP000593.2-201ENST00000542775 1433 ntBASIC17.68■□□□□ 0.42
SHROOM1Q2M3G4 AC009093.8-202ENST00000562902 677 ntTSL 2 BASIC17.68■□□□□ 0.42
SHROOM1Q2M3G4 PTOV1-214ENST00000600603 1443 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
SHROOM1Q2M3G4 IKZF1-217ENST00000612658 962 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
SHROOM1Q2M3G4 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC17.68■□□□□ 0.42
SHROOM1Q2M3G4 TUBB3-215ENST00000625617 570 ntTSL 4 BASIC17.68■□□□□ 0.42
SHROOM1Q2M3G4 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SHROOM1Q2M3G4 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
SHROOM1Q2M3G4 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SHROOM1Q2M3G4 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC17.68■□□□□ 0.42
SHROOM1Q2M3G4 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC17.67■□□□□ 0.42
SHROOM1Q2M3G4 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
SHROOM1Q2M3G4 SUMO1-203ENST00000392246 1536 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SHROOM1Q2M3G4 COL9A1-204ENST00000370496 1372 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
SHROOM1Q2M3G4 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SHROOM1Q2M3G4 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC17.67■□□□□ 0.42
SHROOM1Q2M3G4 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SHROOM1Q2M3G4 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
SHROOM1Q2M3G4 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
SHROOM1Q2M3G4 E2F3P2-201ENST00000447755 1422 ntBASIC17.67■□□□□ 0.42
SHROOM1Q2M3G4 CHAT-212ENST00000640822 1412 ntTSL 5 BASIC17.67■□□□□ 0.42
SHROOM1Q2M3G4 MAPK15-203ENST00000395108 765 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
SHROOM1Q2M3G4 PENK-202ENST00000451791 1029 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SHROOM1Q2M3G4 ANO1-AS1-201ENST00000524987 646 ntTSL 3 BASIC17.67■□□□□ 0.42
SHROOM1Q2M3G4 AC097724.1-201ENST00000609581 426 ntBASIC17.67■□□□□ 0.42
SHROOM1Q2M3G4 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC17.67■□□□□ 0.42
SHROOM1Q2M3G4 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
SHROOM1Q2M3G4 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SHROOM1Q2M3G4 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SHROOM1Q2M3G4 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
SHROOM1Q2M3G4 GSDMA-203ENST00000635792 1546 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
SHROOM1Q2M3G4 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
SHROOM1Q2M3G4 ACSF2-202ENST00000427954 2251 ntTSL 2 BASIC17.67■□□□□ 0.42
SHROOM1Q2M3G4 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
SHROOM1Q2M3G4 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SHROOM1Q2M3G4 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC17.66■□□□□ 0.42
SHROOM1Q2M3G4 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SHROOM1Q2M3G4 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
SHROOM1Q2M3G4 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
SHROOM1Q2M3G4 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SHROOM1Q2M3G4 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
SHROOM1Q2M3G4 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
SHROOM1Q2M3G4 HIST2H2AA3-201ENST00000369159 549 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
SHROOM1Q2M3G4 ACTG1P2-201ENST00000415776 1125 ntBASIC17.66■□□□□ 0.42
SHROOM1Q2M3G4 KRTAP19-9P-201ENST00000421795 191 ntBASIC17.66■□□□□ 0.42
SHROOM1Q2M3G4 ACTG1P11-201ENST00000425411 1125 ntBASIC17.66■□□□□ 0.42
SHROOM1Q2M3G4 VAMP8-203ENST00000432071 664 ntTSL 3 BASIC17.66■□□□□ 0.42
SHROOM1Q2M3G4 AL136309.4-201ENST00000527831 640 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
SHROOM1Q2M3G4 LINC02332-201ENST00000557232 386 ntTSL 3 BASIC17.66■□□□□ 0.42
SHROOM1Q2M3G4 NDUFV2P1-201ENST00000596415 907 ntBASIC17.66■□□□□ 0.42
SHROOM1Q2M3G4 HIST2H2AA4-201ENST00000607355 564 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
SHROOM1Q2M3G4 AC138696.2-201ENST00000607376 223 ntBASIC17.66■□□□□ 0.42
SHROOM1Q2M3G4 MEF2C-227ENST00000626391 1182 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
SHROOM1Q2M3G4 MEF2C-231ENST00000628656 1254 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
SHROOM1Q2M3G4 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC17.66■□□□□ 0.42
SHROOM1Q2M3G4 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
SHROOM1Q2M3G4 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC17.66■□□□□ 0.42
SHROOM1Q2M3G4 SSR4P1-203ENST00000599569 2260 ntBASIC17.66■□□□□ 0.42
SHROOM1Q2M3G4 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SHROOM1Q2M3G4 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC17.66■□□□□ 0.42
SHROOM1Q2M3G4 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms