Protein–RNA interactions for Protein: P67936

TPM4, Tropomyosin alpha-4 chain, humanhuman

Predictions only

Length 248 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4P67936 RSPH6A-203ENST00000600188 1751 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
TPM4P67936 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC17.23■□□□□ 0.35
TPM4P67936 BCKDHA-201ENST00000269980 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
TPM4P67936 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
TPM4P67936 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC17.23■□□□□ 0.35
TPM4P67936 RBM26-203ENST00000438737 4132 ntTSL 5 BASIC17.23■□□□□ 0.35
TPM4P67936 ZC3HAV1-204ENST00000471652 3182 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
TPM4P67936 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
TPM4P67936 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC17.23■□□□□ 0.35
TPM4P67936 SV2A-201ENST00000369145 2903 ntTSL 2 BASIC17.23■□□□□ 0.35
TPM4P67936 RAB37-206ENST00000392615 2655 ntTSL 3 BASIC17.23■□□□□ 0.35
TPM4P67936 SLC6A5-202ENST00000525748 7084 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
TPM4P67936 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
TPM4P67936 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
TPM4P67936 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
TPM4P67936 FO393414.2-201ENST00000405153 598 ntBASIC17.23■□□□□ 0.35
TPM4P67936 AL353705.2-201ENST00000428243 662 ntBASIC17.23■□□□□ 0.35
TPM4P67936 SPCS2P4-201ENST00000436160 681 ntBASIC17.23■□□□□ 0.35
TPM4P67936 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC17.23■□□□□ 0.35
TPM4P67936 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
TPM4P67936 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
TPM4P67936 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC17.23■□□□□ 0.35
TPM4P67936 AC026120.1-201ENST00000611536 926 ntBASIC17.23■□□□□ 0.35
TPM4P67936 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC17.23■□□□□ 0.35
TPM4P67936 SERF2-217ENST00000630046 862 ntTSL 5 BASIC17.23■□□□□ 0.35
TPM4P67936 ICA1-207ENST00000406470 2440 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
TPM4P67936 CHST5-201ENST00000336257 3245 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
TPM4P67936 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC17.23■□□□□ 0.35
TPM4P67936 CPSF1-212ENST00000616140 4494 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
TPM4P67936 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
TPM4P67936 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC17.23■□□□□ 0.35
TPM4P67936 JAKMIP3-201ENST00000298622 6626 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
TPM4P67936 ARHGAP27-203ENST00000428638 4242 ntAPPRIS P2 TSL 5 BASIC17.23■□□□□ 0.35
TPM4P67936 GREM1-202ENST00000560830 2648 ntTSL 2 BASIC17.23■□□□□ 0.35
TPM4P67936 PODN-207ENST00000618387 3065 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
TPM4P67936 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
TPM4P67936 LPAR5-201ENST00000329858 3171 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
TPM4P67936 NEDD4L-205ENST00000400345 3647 ntAPPRIS P4 TSL 1 (best) BASIC17.23■□□□□ 0.35
TPM4P67936 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
TPM4P67936 AC113367.3-201ENST00000508316 1912 ntBASIC17.23■□□□□ 0.35
TPM4P67936 E2F7-201ENST00000322886 5740 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
TPM4P67936 PPM1B-205ENST00000409432 3025 ntAPPRIS ALT1 TSL 1 (best) BASIC17.23■□□□□ 0.35
TPM4P67936 TMEM132C-201ENST00000435159 4947 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
TPM4P67936 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC17.23■□□□□ 0.35
TPM4P67936 PPP1R13L-202ENST00000418234 3118 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
TPM4P67936 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
TPM4P67936 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
TPM4P67936 APCDD1L-201ENST00000371149 3426 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
TPM4P67936 HNRNPLL-205ENST00000409636 3980 ntTSL 2 BASIC17.22■□□□□ 0.35
TPM4P67936 YME1L1-202ENST00000375972 2517 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
TPM4P67936 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
TPM4P67936 SPECC1L-ADORA2A-201ENST00000358654 6204 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
TPM4P67936 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
TPM4P67936 UXT-AS1-201ENST00000590504 1525 ntBASIC17.22■□□□□ 0.35
TPM4P67936 SMC5-201ENST00000361138 5980 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
TPM4P67936 UVRAG-201ENST00000356136 4123 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
TPM4P67936 ZNF683-201ENST00000349618 1610 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
TPM4P67936 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
TPM4P67936 RNPS1-216ENST00000565678 2298 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
TPM4P67936 ELN-208ENST00000380575 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
TPM4P67936 MTHFR-210ENST00000641407 2387 ntBASIC17.22■□□□□ 0.35
TPM4P67936 INTS1-201ENST00000404767 6959 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
TPM4P67936 CYB5D2-201ENST00000301391 1910 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
TPM4P67936 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
TPM4P67936 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
TPM4P67936 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
TPM4P67936 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
TPM4P67936 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC17.22■□□□□ 0.35
TPM4P67936 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC17.22■□□□□ 0.35
TPM4P67936 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
TPM4P67936 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC17.22■□□□□ 0.35
TPM4P67936 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
TPM4P67936 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC17.22■□□□□ 0.35
TPM4P67936 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC17.22■□□□□ 0.35
TPM4P67936 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC17.22■□□□□ 0.35
TPM4P67936 AC243562.1-201ENST00000560672 389 ntBASIC17.22■□□□□ 0.35
TPM4P67936 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC17.22■□□□□ 0.35
TPM4P67936 AC106730.1-201ENST00000566722 1090 ntBASIC17.22■□□□□ 0.35
TPM4P67936 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC17.22■□□□□ 0.35
TPM4P67936 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC17.22■□□□□ 0.35
TPM4P67936 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
TPM4P67936 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
TPM4P67936 STAB1-201ENST00000321725 7928 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
TPM4P67936 PRDM16-206ENST00000511072 4282 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
TPM4P67936 LTBP3-221ENST00000532932 3327 ntTSL 2 BASIC17.22■□□□□ 0.35
TPM4P67936 ANKRD11-203ENST00000378330 9132 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
TPM4P67936 NACC2-202ENST00000371753 6802 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
TPM4P67936 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
TPM4P67936 KCND3-201ENST00000302127 2659 ntAPPRIS ALT1 TSL 5 BASIC17.22■□□□□ 0.35
TPM4P67936 CRLS1-201ENST00000378863 3958 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
TPM4P67936 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
TPM4P67936 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC17.21■□□□□ 0.35
TPM4P67936 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
TPM4P67936 SLC25A18-201ENST00000327451 2244 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
TPM4P67936 OR2V1-205ENST00000642036 2609 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
TPM4P67936 AXL-202ENST00000359092 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
TPM4P67936 FKBP9-201ENST00000242209 3462 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
TPM4P67936 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
TPM4P67936 IRAK4-212ENST00000551736 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
TPM4P67936 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms