Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 SALL4P5-201ENST00000419001 1760 ntBASIC17.98■□□□□ 0.47
BRCA1P38398 RGS6-217ENST00000555571 1764 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
BRCA1P38398 ZNF691-206ENST00000372508 1577 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
BRCA1P38398 AC024909.3-201ENST00000611513 2257 ntBASIC17.98■□□□□ 0.47
BRCA1P38398 RUBCNL-212ENST00000631139 1948 ntAPPRIS ALT2 TSL 2 BASIC17.98■□□□□ 0.47
BRCA1P38398 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
BRCA1P38398 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC17.98■□□□□ 0.47
BRCA1P38398 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC17.98■□□□□ 0.47
BRCA1P38398 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC17.98■□□□□ 0.47
BRCA1P38398 ERCC1-208ENST00000589165 1453 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
BRCA1P38398 JKAMP-207ENST00000554271 2137 ntTSL 2 BASIC17.98■□□□□ 0.47
BRCA1P38398 PCBP2-215ENST00000549863 1619 ntTSL 5 BASIC17.98■□□□□ 0.47
BRCA1P38398 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
BRCA1P38398 PROK2-201ENST00000295619 1022 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
BRCA1P38398 RPL10-202ENST00000369817 1284 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
BRCA1P38398 DIO1-203ENST00000388876 606 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
BRCA1P38398 AC016757.1-202ENST00000409376 892 ntTSL 3 BASIC17.98■□□□□ 0.47
BRCA1P38398 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC17.98■□□□□ 0.47
BRCA1P38398 RPL3P5-201ENST00000441645 1232 ntBASIC17.98■□□□□ 0.47
BRCA1P38398 ATP1A4-205ENST00000470705 886 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
BRCA1P38398 PAGE3-202ENST00000519203 577 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
BRCA1P38398 AC109479.3-201ENST00000520163 360 ntTSL 3 BASIC17.98■□□□□ 0.47
BRCA1P38398 DIO1-204ENST00000524406 626 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
BRCA1P38398 DIO1-213ENST00000532493 406 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
BRCA1P38398 SRRM2-205ENST00000570971 1132 ntTSL 2 BASIC17.98■□□□□ 0.47
BRCA1P38398 AC004528.1-201ENST00000588380 641 ntTSL 5 BASIC17.98■□□□□ 0.47
BRCA1P38398 MCEMP1-202ENST00000597445 763 ntAPPRIS ALT2 TSL 3 BASIC17.98■□□□□ 0.47
BRCA1P38398 ST5-261ENST00000626808 1071 ntTSL 5 BASIC17.98■□□□□ 0.47
BRCA1P38398 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC17.98■□□□□ 0.47
BRCA1P38398 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
BRCA1P38398 SERPINB6-206ENST00000380546 1375 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
BRCA1P38398 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
BRCA1P38398 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
BRCA1P38398 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC17.98■□□□□ 0.47
BRCA1P38398 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
BRCA1P38398 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
BRCA1P38398 PRPS1-204ENST00000372435 2073 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
BRCA1P38398 MIR3936HG-204ENST00000621103 1793 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
BRCA1P38398 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
BRCA1P38398 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
BRCA1P38398 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
BRCA1P38398 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
BRCA1P38398 ADARB2-AS1-201ENST00000381301 625 ntTSL 2 BASIC17.97■□□□□ 0.47
BRCA1P38398 MIR566-201ENST00000385187 94 ntBASIC17.97■□□□□ 0.47
BRCA1P38398 AL929302.1-201ENST00000426556 871 ntBASIC17.97■□□□□ 0.47
BRCA1P38398 ALG1L3P-201ENST00000503331 765 ntBASIC17.97■□□□□ 0.47
BRCA1P38398 MRPS36-204ENST00000512880 1200 ntTSL 5 BASIC17.97■□□□□ 0.47
BRCA1P38398 MSC-AS1-204ENST00000518916 864 ntTSL 3 BASIC17.97■□□□□ 0.47
BRCA1P38398 LINC01500-204ENST00000556815 752 ntTSL 3 BASIC17.97■□□□□ 0.47
BRCA1P38398 MRPS36-205ENST00000602380 1200 ntTSL 2 BASIC17.97■□□□□ 0.47
BRCA1P38398 AC006483.2-201ENST00000609813 515 ntBASIC17.97■□□□□ 0.47
BRCA1P38398 TP53-221ENST00000615910 1149 ntTSL 5 BASIC17.97■□□□□ 0.47
BRCA1P38398 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
BRCA1P38398 COL4A2-AS2-201ENST00000458403 1522 ntTSL 2 BASIC17.97■□□□□ 0.47
BRCA1P38398 RBFOX3-203ENST00000580155 1519 ntAPPRIS P2 TSL 2 BASIC17.97■□□□□ 0.47
BRCA1P38398 LINC00339-208ENST00000634934 1518 ntTSL 5 BASIC17.97■□□□□ 0.47
BRCA1P38398 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
BRCA1P38398 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
BRCA1P38398 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
BRCA1P38398 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
BRCA1P38398 OGFOD1-209ENST00000568397 1681 ntTSL 5 BASIC17.97■□□□□ 0.47
BRCA1P38398 ATF4-203ENST00000404241 1910 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
BRCA1P38398 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
BRCA1P38398 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC17.97■□□□□ 0.47
BRCA1P38398 PLAC9-203ENST00000372270 534 ntAPPRIS ALT2 TSL 2 BASIC17.97■□□□□ 0.47
BRCA1P38398 ATP6V1E1-202ENST00000399796 1208 ntTSL 2 BASIC17.97■□□□□ 0.47
BRCA1P38398 OR8T1P-201ENST00000421347 918 ntBASIC17.97■□□□□ 0.47
BRCA1P38398 CSNK1G2P1-201ENST00000442675 955 ntBASIC17.97■□□□□ 0.47
BRCA1P38398 DUX4L50-201ENST00000455245 715 ntBASIC17.97■□□□□ 0.47
BRCA1P38398 LINC01056-201ENST00000455711 1234 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
BRCA1P38398 NAA40-205ENST00000539656 577 ntTSL 4 BASIC17.97■□□□□ 0.47
BRCA1P38398 ELP5-212ENST00000574255 671 ntTSL 2 BASIC17.97■□□□□ 0.47
BRCA1P38398 C19orf70-203ENST00000587589 577 ntTSL 5 BASIC17.97■□□□□ 0.47
BRCA1P38398 AC010632.2-201ENST00000588369 1224 ntBASIC17.97■□□□□ 0.47
BRCA1P38398 AC004686.1-201ENST00000605113 538 ntBASIC17.97■□□□□ 0.47
BRCA1P38398 AC007250.1-201ENST00000608934 338 ntBASIC17.97■□□□□ 0.47
BRCA1P38398 SNRPA1-216ENST00000626000 539 ntTSL 5 BASIC17.97■□□□□ 0.47
BRCA1P38398 TXNDC9-201ENST00000264255 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
BRCA1P38398 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC17.96■□□□□ 0.47
BRCA1P38398 PCDHB19P-201ENST00000570871 2371 ntBASIC17.96■□□□□ 0.47
BRCA1P38398 UPK1A-203ENST00000616789 1366 ntTSL 5 BASIC17.96■□□□□ 0.47
BRCA1P38398 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC17.96■□□□□ 0.47
BRCA1P38398 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
BRCA1P38398 AC080080.1-201ENST00000625121 2420 ntBASIC17.96■□□□□ 0.47
BRCA1P38398 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC17.96■□□□□ 0.47
BRCA1P38398 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
BRCA1P38398 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
BRCA1P38398 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
BRCA1P38398 ACE-203ENST00000413513 2237 ntTSL 2 BASIC17.96■□□□□ 0.47
BRCA1P38398 CA12-203ENST00000422263 2556 ntTSL 2 BASIC17.96■□□□□ 0.47
BRCA1P38398 LAIR1-209ENST00000434277 1645 ntAPPRIS ALT2 TSL 2 BASIC17.96■□□□□ 0.47
BRCA1P38398 LIMS1-201ENST00000332345 1235 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
BRCA1P38398 AC097059.1-201ENST00000413103 885 ntTSL 5 BASIC17.96■□□□□ 0.47
BRCA1P38398 RPL35P9-201ENST00000446059 350 ntBASIC17.96■□□□□ 0.47
BRCA1P38398 PAQR9-AS1-203ENST00000497652 516 ntTSL 3 BASIC17.96■□□□□ 0.47
BRCA1P38398 TMEM123-208ENST00000532161 743 ntAPPRIS ALT2 TSL 3 BASIC17.96■□□□□ 0.47
BRCA1P38398 GSTZ1-210ENST00000554279 795 ntTSL 2 BASIC17.96■□□□□ 0.47
BRCA1P38398 MIR5001-201ENST00000580185 100 ntBASIC17.96■□□□□ 0.47
BRCA1P38398 CCDC113-206ENST00000616795 891 ntTSL 5 BASIC17.96■□□□□ 0.47
BRCA1P38398 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 71.9 ms