Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 IGF1-205ENST00000424202 612 ntAPPRIS ALT1 TSL 1 (best) BASIC17.86■□□□□ 0.45
COL4A5P29400 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
COL4A5P29400 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC17.86■□□□□ 0.45
COL4A5P29400 ALG1L13P-202ENST00000519320 584 ntBASIC17.86■□□□□ 0.45
COL4A5P29400 AC003982.2-201ENST00000536933 365 ntTSL 3 BASIC17.86■□□□□ 0.45
COL4A5P29400 CR383656.3-201ENST00000551315 183 ntBASIC17.86■□□□□ 0.45
COL4A5P29400 JKAMP-207ENST00000554271 2137 ntTSL 2 BASIC17.86■□□□□ 0.45
COL4A5P29400 VPS18-202ENST00000558474 873 ntTSL 3 BASIC17.86■□□□□ 0.45
COL4A5P29400 MT3-203ENST00000565838 421 ntTSL 3 BASIC17.86■□□□□ 0.45
COL4A5P29400 AC008758.6-201ENST00000598753 588 ntAPPRIS P1 TSL 4 BASIC17.86■□□□□ 0.45
COL4A5P29400 GLUD1P2-203ENST00000631118 486 ntTSL 3 BASIC17.86■□□□□ 0.45
COL4A5P29400 AP001184.1-201ENST00000637936 376 ntBASIC17.86■□□□□ 0.45
COL4A5P29400 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
COL4A5P29400 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
COL4A5P29400 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
COL4A5P29400 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
COL4A5P29400 CCND3-201ENST00000372987 2233 ntTSL 2 BASIC17.85■□□□□ 0.45
COL4A5P29400 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC17.85■□□□□ 0.45
COL4A5P29400 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
COL4A5P29400 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
COL4A5P29400 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
COL4A5P29400 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC17.85■□□□□ 0.45
COL4A5P29400 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC17.85■□□□□ 0.45
COL4A5P29400 THUMPD3-AS1-212ENST00000520447 1809 ntTSL 5 BASIC17.85■□□□□ 0.45
COL4A5P29400 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC17.85■□□□□ 0.45
COL4A5P29400 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
COL4A5P29400 ACTL7A-201ENST00000333999 1494 ntAPPRIS P1 BASIC17.85■□□□□ 0.45
COL4A5P29400 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
COL4A5P29400 TEX264-201ENST00000341333 1340 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
COL4A5P29400 PMF1-202ENST00000368277 1068 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
COL4A5P29400 CCDC167-201ENST00000373408 619 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
COL4A5P29400 TP53I3-203ENST00000407482 747 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
COL4A5P29400 Metazoa_SRP.100-201ENST00000447610 282 ntBASIC17.85■□□□□ 0.45
COL4A5P29400 SH3BGR-209ENST00000458295 812 ntTSL 3 BASIC17.85■□□□□ 0.45
COL4A5P29400 AC105254.1-201ENST00000507782 621 ntTSL 4 BASIC17.85■□□□□ 0.45
COL4A5P29400 ANO1-AS2-202ENST00000533327 498 ntTSL 3 BASIC17.85■□□□□ 0.45
COL4A5P29400 MRPL49-209ENST00000534078 518 ntTSL 2 BASIC17.85■□□□□ 0.45
COL4A5P29400 ZNF124-206ENST00000543802 1292 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
COL4A5P29400 ZSCAN10-205ENST00000572548 618 ntTSL 3 BASIC17.85■□□□□ 0.45
COL4A5P29400 AC040162.4-201ENST00000574912 1185 ntAPPRIS P1 TSL 3 BASIC17.85■□□□□ 0.45
COL4A5P29400 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
COL4A5P29400 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
COL4A5P29400 CES3-203ENST00000543856 3178 ntTSL 2 BASIC17.85■□□□□ 0.45
COL4A5P29400 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
COL4A5P29400 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
COL4A5P29400 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
COL4A5P29400 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
COL4A5P29400 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
COL4A5P29400 SALL4P5-201ENST00000419001 1760 ntBASIC17.85■□□□□ 0.45
COL4A5P29400 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC17.85■□□□□ 0.45
COL4A5P29400 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC17.85■□□□□ 0.45
COL4A5P29400 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
COL4A5P29400 EDNRB-204ENST00000626030 1571 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
COL4A5P29400 AL590440.2-201ENST00000641973 1595 ntBASIC17.85■□□□□ 0.45
COL4A5P29400 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
COL4A5P29400 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC17.84■□□□□ 0.45
COL4A5P29400 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC17.84■□□□□ 0.45
COL4A5P29400 LINC00470-210ENST00000584090 1334 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
COL4A5P29400 C8G-201ENST00000224181 855 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
COL4A5P29400 NCR3-204ENST00000376073 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
COL4A5P29400 PPM1N-201ENST00000396735 895 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
COL4A5P29400 INS-IGF2-202ENST00000397270 828 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
COL4A5P29400 HSPB7-203ENST00000406363 648 ntAPPRIS ALT1 TSL 1 (best) BASIC17.84■□□□□ 0.45
COL4A5P29400 LINC01868-201ENST00000414965 562 ntTSL 4 BASIC17.84■□□□□ 0.45
COL4A5P29400 AL592076.1-201ENST00000424448 303 ntBASIC17.84■□□□□ 0.45
COL4A5P29400 PPM1N-208ENST00000456399 618 ntTSL 3 BASIC17.84■□□□□ 0.45
COL4A5P29400 OR2T27-202ENST00000460972 1136 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
COL4A5P29400 AP000911.2-201ENST00000534330 502 ntBASIC17.84■□□□□ 0.45
COL4A5P29400 AC009119.2-201ENST00000561562 723 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
COL4A5P29400 NUDT4P2-201ENST00000578341 546 ntBASIC17.84■□□□□ 0.45
COL4A5P29400 AC087392.5-201ENST00000612517 489 ntBASIC17.84■□□□□ 0.45
COL4A5P29400 LINC00431-202ENST00000636375 159 ntBASIC17.84■□□□□ 0.45
COL4A5P29400 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
COL4A5P29400 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
COL4A5P29400 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
COL4A5P29400 ADCYAP1R1-204ENST00000409489 1761 ntTSL 5 BASIC17.84■□□□□ 0.45
COL4A5P29400 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
COL4A5P29400 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC17.84■□□□□ 0.45
COL4A5P29400 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
COL4A5P29400 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC17.84■□□□□ 0.45
COL4A5P29400 TMPRSS4-211ENST00000522307 1634 ntTSL 2 BASIC17.84■□□□□ 0.45
COL4A5P29400 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
COL4A5P29400 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC17.84■□□□□ 0.45
COL4A5P29400 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
COL4A5P29400 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
COL4A5P29400 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
COL4A5P29400 CD48-203ENST00000613788 1500 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
COL4A5P29400 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
COL4A5P29400 VAMP2-202ENST00000404970 1479 ntTSL 2 BASIC17.84■□□□□ 0.45
COL4A5P29400 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
COL4A5P29400 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC17.84■□□□□ 0.45
COL4A5P29400 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
COL4A5P29400 RHOH-218ENST00000613272 1865 ntAPPRIS P1 TSL 3 BASIC17.84■□□□□ 0.45
COL4A5P29400 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
COL4A5P29400 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
COL4A5P29400 ZNF619-201ENST00000314686 2233 ntTSL 2 BASIC17.84■□□□□ 0.45
COL4A5P29400 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
COL4A5P29400 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC17.84■□□□□ 0.45
COL4A5P29400 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC17.84■□□□□ 0.45
COL4A5P29400 BGLAP-201ENST00000368272 732 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 44.1 ms