Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 ENPP7P14-201ENST00000621765 1040 ntBASIC13.37□□□□□ -0.27
COL8A1P27658 AC006453.1-201ENST00000636037 1257 ntBASIC13.37□□□□□ -0.27
COL8A1P27658 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC13.37□□□□□ -0.27
COL8A1P27658 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
COL8A1P27658 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC13.37□□□□□ -0.27
COL8A1P27658 SERF2-201ENST00000249786 1537 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
COL8A1P27658 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC13.37□□□□□ -0.27
COL8A1P27658 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC13.37□□□□□ -0.27
COL8A1P27658 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC13.37□□□□□ -0.27
COL8A1P27658 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC13.37□□□□□ -0.27
COL8A1P27658 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
COL8A1P27658 ATG10-203ENST00000458350 1795 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
COL8A1P27658 PPM1F-203ENST00000407142 5587 ntAPPRIS ALT2 TSL 5 BASIC13.37□□□□□ -0.27
COL8A1P27658 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC13.37□□□□□ -0.27
COL8A1P27658 CCDC197-206ENST00000640978 1429 ntAPPRIS ALT2 TSL 5 BASIC13.37□□□□□ -0.27
COL8A1P27658 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
COL8A1P27658 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC13.37□□□□□ -0.27
COL8A1P27658 PPP1R26-202ENST00000401470 4769 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
COL8A1P27658 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC13.37□□□□□ -0.27
COL8A1P27658 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
COL8A1P27658 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC13.36□□□□□ -0.27
COL8A1P27658 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC13.36□□□□□ -0.27
COL8A1P27658 CES3-203ENST00000543856 3178 ntTSL 2 BASIC13.36□□□□□ -0.27
COL8A1P27658 AK4-202ENST00000395334 6998 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
COL8A1P27658 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC13.36□□□□□ -0.27
COL8A1P27658 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
COL8A1P27658 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
COL8A1P27658 ABCB9-216ENST00000542678 6051 ntAPPRIS P2 TSL 1 (best) BASIC13.36□□□□□ -0.27
COL8A1P27658 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
COL8A1P27658 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
COL8A1P27658 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC13.36□□□□□ -0.27
COL8A1P27658 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC13.36□□□□□ -0.27
COL8A1P27658 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
COL8A1P27658 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC13.36□□□□□ -0.27
COL8A1P27658 PCDHA4-203ENST00000530339 5251 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
COL8A1P27658 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
COL8A1P27658 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
COL8A1P27658 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
COL8A1P27658 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
COL8A1P27658 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
COL8A1P27658 P2RX5-208ENST00000552050 1536 ntTSL 2 BASIC13.36□□□□□ -0.27
COL8A1P27658 LRRC59-203ENST00000576448 1531 ntBASIC13.36□□□□□ -0.27
COL8A1P27658 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC13.36□□□□□ -0.27
COL8A1P27658 RAB40AL-201ENST00000218249 1029 ntAPPRIS P1 BASIC13.36□□□□□ -0.27
COL8A1P27658 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
COL8A1P27658 KLK8-204ENST00000391806 1051 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
COL8A1P27658 AL354877.1-201ENST00000424412 413 ntBASIC13.36□□□□□ -0.27
COL8A1P27658 PDIA3P2-201ENST00000428073 158 ntBASIC13.36□□□□□ -0.27
COL8A1P27658 GLYCTK-204ENST00000471180 992 ntTSL 2 BASIC13.36□□□□□ -0.27
COL8A1P27658 AC092535.3-201ENST00000504969 468 ntTSL 3 BASIC13.36□□□□□ -0.27
COL8A1P27658 GAPDHP40-201ENST00000505218 1006 ntBASIC13.36□□□□□ -0.27
COL8A1P27658 AL845331.2-201ENST00000561882 1044 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
COL8A1P27658 AC008687.1-201ENST00000591656 786 ntAPPRIS P1 TSL 2 BASIC13.36□□□□□ -0.27
COL8A1P27658 AC097359.3-201ENST00000603982 1210 ntBASIC13.36□□□□□ -0.27
COL8A1P27658 ITGA9-AS1-213ENST00000614028 913 ntTSL 5 BASIC13.36□□□□□ -0.27
COL8A1P27658 GLUD1P2-203ENST00000631118 486 ntTSL 3 BASIC13.36□□□□□ -0.27
COL8A1P27658 FBN2-205ENST00000508989 4987 ntTSL 2 BASIC13.36□□□□□ -0.27
COL8A1P27658 PAQR8-202ENST00000442253 4738 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
COL8A1P27658 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
COL8A1P27658 COL11A2-201ENST00000341947 6425 ntAPPRIS ALT2 TSL 5 BASIC13.36□□□□□ -0.27
COL8A1P27658 CA12-203ENST00000422263 2556 ntTSL 2 BASIC13.36□□□□□ -0.27
COL8A1P27658 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
COL8A1P27658 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
COL8A1P27658 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC13.36□□□□□ -0.27
COL8A1P27658 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC13.36□□□□□ -0.27
COL8A1P27658 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
COL8A1P27658 MAP3K4-202ENST00000366919 5397 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
COL8A1P27658 LINC02273-201ENST00000499452 1592 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
COL8A1P27658 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
COL8A1P27658 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
COL8A1P27658 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
COL8A1P27658 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
COL8A1P27658 RCOR1-201ENST00000262241 5754 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
COL8A1P27658 CPEB2-209ENST00000538197 6878 ntAPPRIS P4 TSL 5 BASIC13.35□□□□□ -0.27
COL8A1P27658 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
COL8A1P27658 CICP6-201ENST00000457191 2729 ntBASIC13.35□□□□□ -0.27
COL8A1P27658 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC13.35□□□□□ -0.27
COL8A1P27658 PAFAH1B1-202ENST00000397195 5497 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
COL8A1P27658 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
COL8A1P27658 NACC2-201ENST00000277554 6899 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
COL8A1P27658 NBEA-203ENST00000379939 10738 ntAPPRIS ALT1 TSL 5 BASIC13.35□□□□□ -0.27
COL8A1P27658 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC13.35□□□□□ -0.27
COL8A1P27658 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
COL8A1P27658 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
COL8A1P27658 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC13.35□□□□□ -0.27
COL8A1P27658 GGT3P-204ENST00000453783 1664 ntBASIC13.35□□□□□ -0.27
COL8A1P27658 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC13.35□□□□□ -0.27
COL8A1P27658 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
COL8A1P27658 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC13.35□□□□□ -0.27
COL8A1P27658 TPM1-202ENST00000288398 1295 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
COL8A1P27658 NPPA-201ENST00000376476 728 ntTSL 3 BASIC13.35□□□□□ -0.27
COL8A1P27658 CALCA-203ENST00000396372 581 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
COL8A1P27658 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC13.35□□□□□ -0.27
COL8A1P27658 TCERG1L-AS1-201ENST00000436942 472 ntTSL 2 BASIC13.35□□□□□ -0.27
COL8A1P27658 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC13.35□□□□□ -0.27
COL8A1P27658 TVP23C-205ENST00000518321 1080 ntAPPRIS P2 TSL 1 (best) BASIC13.35□□□□□ -0.27
COL8A1P27658 NCK2-206ENST00000522586 490 ntTSL 5 BASIC13.35□□□□□ -0.27
COL8A1P27658 AC138230.1-201ENST00000525893 664 ntTSL 5 BASIC13.35□□□□□ -0.27
COL8A1P27658 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC13.35□□□□□ -0.27
COL8A1P27658 AL928654.3-201ENST00000552675 445 ntTSL 3 BASIC13.35□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms