Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 CCDC18-AS1-219ENST00000451302 1212 ntTSL 3 BASIC18.69■□□□□ 0.58
COL5A3P25940 FANCA-205ENST00000543736 1000 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
COL5A3P25940 AC003686.1-201ENST00000550956 1034 ntBASIC18.69■□□□□ 0.58
COL5A3P25940 AC040162.4-201ENST00000574912 1185 ntAPPRIS P1 TSL 3 BASIC18.69■□□□□ 0.58
COL5A3P25940 AC087392.5-201ENST00000612517 489 ntBASIC18.69■□□□□ 0.58
COL5A3P25940 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL5A3P25940 ZNF691-206ENST00000372508 1577 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL5A3P25940 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL5A3P25940 AMHR2-201ENST00000257863 1863 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL5A3P25940 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL5A3P25940 TMEM177-202ENST00000401466 1346 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
COL5A3P25940 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC18.69■□□□□ 0.58
COL5A3P25940 BSDC1-203ENST00000419121 1473 ntTSL 2 BASIC18.69■□□□□ 0.58
COL5A3P25940 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL5A3P25940 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC18.69■□□□□ 0.58
COL5A3P25940 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL5A3P25940 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
COL5A3P25940 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL5A3P25940 CGB1-201ENST00000301407 573 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL5A3P25940 C2orf70-201ENST00000329615 731 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
COL5A3P25940 SPIN2B-203ENST00000374910 725 ntTSL 3 BASIC18.69■□□□□ 0.58
COL5A3P25940 TRPM2-AS-201ENST00000423310 586 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
COL5A3P25940 AL008733.1-201ENST00000440516 469 ntTSL 3 BASIC18.69■□□□□ 0.58
COL5A3P25940 AL138731.1-201ENST00000452624 739 ntTSL 3 BASIC18.69■□□□□ 0.58
COL5A3P25940 AC125603.3-201ENST00000550742 486 ntTSL 3 BASIC18.69■□□□□ 0.58
COL5A3P25940 TCL1A-205ENST00000555202 717 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL5A3P25940 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL5A3P25940 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
COL5A3P25940 KCNN3-202ENST00000358505 1658 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
COL5A3P25940 AL391005.1-201ENST00000623953 2435 ntBASIC18.68■□□□□ 0.58
COL5A3P25940 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
COL5A3P25940 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL5A3P25940 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL5A3P25940 MCC-208ENST00000514701 2855 ntTSL 2 BASIC18.68■□□□□ 0.58
COL5A3P25940 R3HDM2P2-201ENST00000401880 2116 ntBASIC18.68■□□□□ 0.58
COL5A3P25940 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
COL5A3P25940 PRORSD1P-202ENST00000563365 2154 ntBASIC18.68■□□□□ 0.58
COL5A3P25940 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL5A3P25940 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC18.68■□□□□ 0.58
COL5A3P25940 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL5A3P25940 C18orf15-201ENST00000623680 2534 ntBASIC18.68■□□□□ 0.58
COL5A3P25940 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL5A3P25940 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL5A3P25940 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL5A3P25940 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL5A3P25940 FERD3L-201ENST00000275461 640 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
COL5A3P25940 U2AF1L4-201ENST00000292879 729 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
COL5A3P25940 ZCCHC13-201ENST00000339534 842 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
COL5A3P25940 BGLAP-201ENST00000368272 732 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL5A3P25940 AL009181.1-201ENST00000418471 1085 ntTSL 5 BASIC18.68■□□□□ 0.58
COL5A3P25940 BX284668.5-201ENST00000422124 406 ntTSL 2 BASIC18.68■□□□□ 0.58
COL5A3P25940 FKBP11-202ENST00000444214 630 ntTSL 2 BASIC18.68■□□□□ 0.58
COL5A3P25940 AL512330.1-201ENST00000456701 349 ntTSL 3 BASIC18.68■□□□□ 0.58
COL5A3P25940 MSC-AS1-204ENST00000518916 864 ntTSL 3 BASIC18.68■□□□□ 0.58
COL5A3P25940 CYB561D1-207ENST00000527072 892 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
COL5A3P25940 TSHR-205ENST00000554263 1184 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
COL5A3P25940 TSHR-206ENST00000554435 1089 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
COL5A3P25940 LINC00969-294ENST00000627609 992 ntTSL 5 BASIC18.68■□□□□ 0.58
COL5A3P25940 TEX264-201ENST00000341333 1340 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL5A3P25940 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL5A3P25940 AC020658.6-201ENST00000623564 1870 ntBASIC18.68■□□□□ 0.58
COL5A3P25940 PCNA-202ENST00000379160 1359 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
COL5A3P25940 GK-204ENST00000378945 2063 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL5A3P25940 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL5A3P25940 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC18.67■□□□□ 0.58
COL5A3P25940 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL5A3P25940 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
COL5A3P25940 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC18.67■□□□□ 0.58
COL5A3P25940 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
COL5A3P25940 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
COL5A3P25940 AL365203.3-201ENST00000609742 2057 ntBASIC18.67■□□□□ 0.58
COL5A3P25940 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL5A3P25940 PIGL-201ENST00000225609 1137 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL5A3P25940 IL23A-201ENST00000228534 1046 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL5A3P25940 PPA2-204ENST00000354147 667 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
COL5A3P25940 Metazoa_SRP.6-201ENST00000366384 298 ntBASIC18.67■□□□□ 0.58
COL5A3P25940 PPA2-205ENST00000432483 859 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
COL5A3P25940 TP53AIP1-201ENST00000458238 777 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL5A3P25940 AC034231.1-201ENST00000507251 537 ntTSL 4 BASIC18.67■□□□□ 0.58
COL5A3P25940 AC025154.2-202ENST00000552379 592 ntTSL 3 BASIC18.67■□□□□ 0.58
COL5A3P25940 AP005264.1-201ENST00000586226 733 ntTSL 3 BASIC18.67■□□□□ 0.58
COL5A3P25940 AC011462.2-201ENST00000598887 344 ntTSL 5 BASIC18.67■□□□□ 0.58
COL5A3P25940 AC007326.1-201ENST00000604539 458 ntBASIC18.67■□□□□ 0.58
COL5A3P25940 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL5A3P25940 SERHL-201ENST00000359906 1346 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
COL5A3P25940 RANBP1-208ENST00000430524 1389 ntTSL 3 BASIC18.67■□□□□ 0.58
COL5A3P25940 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL5A3P25940 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
COL5A3P25940 RPL13-204ENST00000452368 1455 ntTSL 2 BASIC18.67■□□□□ 0.58
COL5A3P25940 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL5A3P25940 CSF2RA-219ENST00000501036 1622 ntTSL 2 BASIC18.67■□□□□ 0.58
COL5A3P25940 G6PD-201ENST00000369620 1799 ntTSL 5 BASIC18.67■□□□□ 0.58
COL5A3P25940 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL5A3P25940 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
COL5A3P25940 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL5A3P25940 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC18.67■□□□□ 0.58
COL5A3P25940 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
COL5A3P25940 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC18.66■□□□□ 0.58
COL5A3P25940 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
COL5A3P25940 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 66.6 ms