Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
VCANP13611 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC15.43■□□□□ 0.06
VCANP13611 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
VCANP13611 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
VCANP13611 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
VCANP13611 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC15.43■□□□□ 0.06
VCANP13611 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC15.43■□□□□ 0.06
VCANP13611 HLA-DQB2-232ENST00000437316 1214 ntAPPRIS P1 BASIC15.42■□□□□ 0.06
VCANP13611 FOXP4-AS1-205ENST00000454812 575 ntTSL 2 BASIC15.42■□□□□ 0.06
VCANP13611 AC006116.2-201ENST00000589958 988 ntBASIC15.42■□□□□ 0.06
VCANP13611 AC008750.3-201ENST00000601148 437 ntTSL 5 BASIC15.42■□□□□ 0.06
VCANP13611 AC005865.2-202ENST00000635814 725 ntBASIC15.42■□□□□ 0.06
VCANP13611 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
VCANP13611 WIPI1-201ENST00000262139 1832 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
VCANP13611 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
VCANP13611 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
VCANP13611 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
VCANP13611 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
VCANP13611 BANF1P3-201ENST00000412556 261 ntBASIC15.42■□□□□ 0.06
VCANP13611 LINC01983-201ENST00000413586 574 ntTSL 2 BASIC15.42■□□□□ 0.06
VCANP13611 AL356417.1-201ENST00000421161 845 ntTSL 3 BASIC15.42■□□□□ 0.06
VCANP13611 AL356000.1-201ENST00000441073 1238 ntBASIC15.42■□□□□ 0.06
VCANP13611 AAMDC-207ENST00000527134 693 ntTSL 3 BASIC15.42■□□□□ 0.06
VCANP13611 LINC02352-201ENST00000557928 468 ntTSL 5 BASIC15.42■□□□□ 0.06
VCANP13611 AC005154.1-232ENST00000582549 556 ntTSL 5 BASIC15.42■□□□□ 0.06
VCANP13611 AL450472.2-201ENST00000603663 1156 ntBASIC15.42■□□□□ 0.06
VCANP13611 AC008972.2-201ENST00000606587 494 ntBASIC15.42■□□□□ 0.06
VCANP13611 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
VCANP13611 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
VCANP13611 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC15.42■□□□□ 0.06
VCANP13611 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
VCANP13611 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC15.42■□□□□ 0.06
VCANP13611 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC15.42■□□□□ 0.06
VCANP13611 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
VCANP13611 PPIA-201ENST00000355968 818 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
VCANP13611 KRT18P46-201ENST00000435568 1279 ntBASIC15.42■□□□□ 0.06
VCANP13611 PPIA-208ENST00000489459 907 ntTSL 2 BASIC15.42■□□□□ 0.06
VCANP13611 AC092862.1-201ENST00000541534 533 ntBASIC15.42■□□□□ 0.06
VCANP13611 LINC00621-201ENST00000577004 1177 ntTSL 4 BASIC15.42■□□□□ 0.06
VCANP13611 PPIA-210ENST00000620047 827 ntTSL 5 BASIC15.42■□□□□ 0.06
VCANP13611 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC15.42■□□□□ 0.06
VCANP13611 CTSL-201ENST00000340342 1436 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
VCANP13611 COLQ-202ENST00000383786 1482 ntTSL 5 BASIC15.42■□□□□ 0.06
VCANP13611 ERCC1-208ENST00000589165 1453 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
VCANP13611 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
VCANP13611 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC15.42■□□□□ 0.06
VCANP13611 LINC01144-201ENST00000626198 1710 ntBASIC15.42■□□□□ 0.06
VCANP13611 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
VCANP13611 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
VCANP13611 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
VCANP13611 TXNDC9-201ENST00000264255 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
VCANP13611 C9orf24-201ENST00000297623 1151 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
VCANP13611 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
VCANP13611 UBXN11-202ENST00000357089 1555 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
VCANP13611 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC15.41■□□□□ 0.06
VCANP13611 C9orf24-205ENST00000379133 712 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
VCANP13611 ACTG1P19-201ENST00000418987 1116 ntBASIC15.41■□□□□ 0.06
VCANP13611 MED7-202ENST00000420343 1382 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
VCANP13611 HNRNPA1P25-201ENST00000422644 937 ntBASIC15.41■□□□□ 0.06
VCANP13611 AL512622.1-202ENST00000443922 478 ntTSL 3 BASIC15.41■□□□□ 0.06
VCANP13611 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC15.41■□□□□ 0.06
VCANP13611 PHKG1P2-201ENST00000457537 863 ntBASIC15.41■□□□□ 0.06
VCANP13611 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC15.41■□□□□ 0.06
VCANP13611 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC15.41■□□□□ 0.06
VCANP13611 LINC02380-201ENST00000510956 1038 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
VCANP13611 AL162632.1-201ENST00000546784 548 ntTSL 4 BASIC15.41■□□□□ 0.06
VCANP13611 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC15.41■□□□□ 0.06
VCANP13611 MIR4640-201ENST00000581824 90 ntBASIC15.41■□□□□ 0.06
VCANP13611 AC010632.2-201ENST00000588369 1224 ntBASIC15.41■□□□□ 0.06
VCANP13611 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC15.41■□□□□ 0.06
VCANP13611 UPK1A-203ENST00000616789 1366 ntTSL 5 BASIC15.41■□□□□ 0.06
VCANP13611 MIR6746-201ENST00000620971 63 ntBASIC15.41■□□□□ 0.06
VCANP13611 LINC01588-216ENST00000623502 975 ntTSL 2 BASIC15.41■□□□□ 0.06
VCANP13611 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC15.41■□□□□ 0.06
VCANP13611 LINC00334-203ENST00000638500 1377 ntTSL 5 BASIC15.41■□□□□ 0.06
VCANP13611 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
VCANP13611 ALOX12P2-203ENST00000570921 1945 ntBASIC15.41■□□□□ 0.06
VCANP13611 FKBP5-201ENST00000357266 3772 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
VCANP13611 PORCN-201ENST00000326194 1755 ntAPPRIS P4 TSL 1 (best) BASIC15.41■□□□□ 0.06
VCANP13611 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
VCANP13611 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
VCANP13611 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC15.41■□□□□ 0.06
VCANP13611 AC092570.1-201ENST00000414446 469 ntBASIC15.41■□□□□ 0.06
VCANP13611 CCDC18-AS1-219ENST00000451302 1212 ntTSL 3 BASIC15.41■□□□□ 0.06
VCANP13611 AC103923.1-201ENST00000453229 1228 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
VCANP13611 LINC02171-201ENST00000508619 1033 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
VCANP13611 LINC01029-202ENST00000578833 366 ntTSL 3 BASIC15.41■□□□□ 0.06
VCANP13611 AC025048.2-201ENST00000590744 786 ntTSL 2 BASIC15.41■□□□□ 0.06
VCANP13611 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
VCANP13611 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
VCANP13611 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
VCANP13611 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
VCANP13611 PRRT2-202ENST00000358758 2567 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
VCANP13611 GGTLC4P-201ENST00000402176 664 ntBASIC15.41■□□□□ 0.06
VCANP13611 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC15.41■□□□□ 0.06
VCANP13611 KCNK16-204ENST00000437525 981 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
VCANP13611 AC022113.2-201ENST00000504935 704 ntTSL 3 BASIC15.41■□□□□ 0.06
VCANP13611 RNF103-CHMP3-202ENST00000604011 1135 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
VCANP13611 FXYD6-FXYD2-202ENST00000614497 634 ntAPPRIS P1 TSL 3 BASIC15.41■□□□□ 0.06
VCANP13611 FH-201ENST00000366560 1797 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 47.1 ms