Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC13.97□□□□□ -0.17
HOXD4P09016 AC026410.3-201ENST00000514280 936 ntBASIC13.97□□□□□ -0.17
HOXD4P09016 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC13.97□□□□□ -0.17
HOXD4P09016 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC13.97□□□□□ -0.17
HOXD4P09016 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC13.97□□□□□ -0.17
HOXD4P09016 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
HOXD4P09016 AC079316.1-201ENST00000548397 411 ntBASIC13.97□□□□□ -0.17
HOXD4P09016 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
HOXD4P09016 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC13.97□□□□□ -0.17
HOXD4P09016 ANKS3-227ENST00000592711 580 ntTSL 4 BASIC13.97□□□□□ -0.17
HOXD4P09016 BNIP3P29-201ENST00000598302 571 ntBASIC13.97□□□□□ -0.17
HOXD4P09016 METTL26-214ENST00000614890 801 ntTSL 3 BASIC13.97□□□□□ -0.17
HOXD4P09016 AC011447.5-201ENST00000616168 564 ntBASIC13.97□□□□□ -0.17
HOXD4P09016 STX18-AS1-207ENST00000610009 2406 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
HOXD4P09016 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
HOXD4P09016 ADAMTS1-201ENST00000284984 5191 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
HOXD4P09016 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC13.97□□□□□ -0.17
HOXD4P09016 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
HOXD4P09016 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
HOXD4P09016 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC13.97□□□□□ -0.17
HOXD4P09016 IMPDH1-203ENST00000354269 2580 ntTSL 2 BASIC13.97□□□□□ -0.17
HOXD4P09016 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
HOXD4P09016 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
HOXD4P09016 E2F3-201ENST00000346618 4749 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
HOXD4P09016 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC13.97□□□□□ -0.17
HOXD4P09016 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC13.97□□□□□ -0.17
HOXD4P09016 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
HOXD4P09016 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
HOXD4P09016 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC13.97□□□□□ -0.17
HOXD4P09016 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
HOXD4P09016 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC13.96□□□□□ -0.17
HOXD4P09016 BTBD11-204ENST00000420571 3478 ntTSL 5 BASIC13.96□□□□□ -0.17
HOXD4P09016 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC13.96□□□□□ -0.17
HOXD4P09016 MTHFR-217ENST00000641820 1569 ntBASIC13.96□□□□□ -0.17
HOXD4P09016 AC138894.1-201ENST00000635887 2824 ntTSL 5 BASIC13.96□□□□□ -0.17
HOXD4P09016 FMR1-203ENST00000370470 1774 ntTSL 5 BASIC13.96□□□□□ -0.17
HOXD4P09016 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC13.96□□□□□ -0.17
HOXD4P09016 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC13.96□□□□□ -0.17
HOXD4P09016 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC13.96□□□□□ -0.17
HOXD4P09016 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
HOXD4P09016 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC13.96□□□□□ -0.17
HOXD4P09016 SLC35A1-202ENST00000369556 1720 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
HOXD4P09016 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC13.96□□□□□ -0.17
HOXD4P09016 SYNGAP1-203ENST00000428982 4339 ntTSL 5 BASIC13.96□□□□□ -0.17
HOXD4P09016 CCNDBP1-201ENST00000300213 3660 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
HOXD4P09016 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
HOXD4P09016 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC13.96□□□□□ -0.17
HOXD4P09016 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC13.96□□□□□ -0.17
HOXD4P09016 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC13.96□□□□□ -0.17
HOXD4P09016 ZNF138-201ENST00000307355 1141 ntAPPRIS ALT2 TSL 4 BASIC13.96□□□□□ -0.17
HOXD4P09016 TRMT112-201ENST00000308774 561 ntAPPRIS ALT1 TSL 2 BASIC13.96□□□□□ -0.17
HOXD4P09016 THEMIS2-204ENST00000373927 1082 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
HOXD4P09016 TEX30-203ENST00000376022 828 ntTSL 2 BASIC13.96□□□□□ -0.17
HOXD4P09016 STX1A-203ENST00000395155 783 ntTSL 2 BASIC13.96□□□□□ -0.17
HOXD4P09016 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.17
HOXD4P09016 ACTBP11-201ENST00000436287 1126 ntBASIC13.96□□□□□ -0.17
HOXD4P09016 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC13.96□□□□□ -0.17
HOXD4P09016 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC13.96□□□□□ -0.17
HOXD4P09016 XRCC3-210ENST00000554974 575 ntTSL 4 BASIC13.96□□□□□ -0.17
HOXD4P09016 AL122035.1-201ENST00000556640 550 ntTSL 2 BASIC13.96□□□□□ -0.17
HOXD4P09016 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC13.96□□□□□ -0.17
HOXD4P09016 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC13.96□□□□□ -0.17
HOXD4P09016 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC13.96□□□□□ -0.17
HOXD4P09016 RPSAP52-203ENST00000622976 1023 ntBASIC13.96□□□□□ -0.17
HOXD4P09016 NFATC1-205ENST00000427363 2832 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
HOXD4P09016 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
HOXD4P09016 SFI1-209ENST00000443011 3579 ntTSL 5 BASIC13.96□□□□□ -0.17
HOXD4P09016 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC13.96□□□□□ -0.17
HOXD4P09016 BRF1-211ENST00000547530 3358 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
HOXD4P09016 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC13.96□□□□□ -0.17
HOXD4P09016 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC13.96□□□□□ -0.17
HOXD4P09016 PCDHGB1-202ENST00000611598 2592 ntAPPRIS ALT2 BASIC13.96□□□□□ -0.17
HOXD4P09016 PPT1-215ENST00000641471 2368 ntBASIC13.96□□□□□ -0.18
HOXD4P09016 ALG12-201ENST00000330817 5350 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
HOXD4P09016 MOCS1-205ENST00000373195 2852 ntTSL 2 BASIC13.96□□□□□ -0.18
HOXD4P09016 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC13.96□□□□□ -0.18
HOXD4P09016 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC13.96□□□□□ -0.18
HOXD4P09016 NOVA2-201ENST00000263257 7803 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
HOXD4P09016 EGLN1-201ENST00000366641 7097 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
HOXD4P09016 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
HOXD4P09016 FMNL1-206ENST00000587489 2487 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
HOXD4P09016 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC13.95□□□□□ -0.18
HOXD4P09016 LINC01185-202ENST00000452343 1705 ntTSL 2 BASIC13.95□□□□□ -0.18
HOXD4P09016 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC13.95□□□□□ -0.18
HOXD4P09016 ZNF596-201ENST00000308811 2783 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
HOXD4P09016 RABEPK-201ENST00000259460 1313 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
HOXD4P09016 POMP-201ENST00000380842 1330 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
HOXD4P09016 CCAR2-202ENST00000389279 3980 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
HOXD4P09016 WLS-201ENST00000262348 2748 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
HOXD4P09016 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC13.95□□□□□ -0.18
HOXD4P09016 ZNF365-207ENST00000410046 3379 ntTSL 2 BASIC13.95□□□□□ -0.18
HOXD4P09016 RUFY1-202ENST00000393438 2454 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
HOXD4P09016 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC13.95□□□□□ -0.18
HOXD4P09016 BAK1-201ENST00000360661 2132 ntTSL 5 BASIC13.95□□□□□ -0.18
HOXD4P09016 UBE2T-201ENST00000367274 922 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
HOXD4P09016 MGST3-203ENST00000367885 680 ntTSL 2 BASIC13.95□□□□□ -0.18
HOXD4P09016 RHOC-206ENST00000369637 888 ntAPPRIS P1 TSL 3 BASIC13.95□□□□□ -0.18
HOXD4P09016 IGLV2-23-201ENST00000390306 502 ntAPPRIS P1 BASIC13.95□□□□□ -0.18
HOXD4P09016 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC13.95□□□□□ -0.18
HOXD4P09016 AC245100.3-201ENST00000441281 285 ntBASIC13.95□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 46.1 ms